miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 105235 0.7 0.795833
Target:  5'- cCGcGGCCGUGAucuGCGGcGGcauCCGCGc -3'
miRNA:   3'- -GC-CCGGCAUUu--CGCCuUCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 127798 0.7 0.795833
Target:  5'- gCGGGCCGgcgccGCGGcGGcggGCCGCu -3'
miRNA:   3'- -GCCCGGCauuu-CGCCuUCaa-UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 72828 0.7 0.804897
Target:  5'- aGGGCCGcAAGGCGGucggccAGGgcGCCaGCGc -3'
miRNA:   3'- gCCCGGCaUUUCGCC------UUCaaUGG-CGC- -5'
23616 3' -53.9 NC_005261.1 + 120939 0.7 0.813801
Target:  5'- cCGGGCgCGggAAGGUGGAGGcucgcgccCCGCGg -3'
miRNA:   3'- -GCCCG-GCa-UUUCGCCUUCaau-----GGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74348 0.69 0.855618
Target:  5'- -aGGCgCGgc-GGCGGAAGgggcgGCCGCGu -3'
miRNA:   3'- gcCCG-GCauuUCGCCUUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 2584 0.69 0.878279
Target:  5'- cCGGGCgGcacgcGGCGGAAGccGCCGuCGg -3'
miRNA:   3'- -GCCCGgCauu--UCGCCUUCaaUGGC-GC- -5'
23616 3' -53.9 NC_005261.1 + 127338 0.69 0.878279
Target:  5'- gGGGCCGgagcGGCGGGgcgcuGGgc-CCGCGu -3'
miRNA:   3'- gCCCGGCauu-UCGCCU-----UCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98738 0.69 0.863388
Target:  5'- aCGcGGCCGc---GCGGgcGUUgGCCGCGc -3'
miRNA:   3'- -GC-CCGGCauuuCGCCuuCAA-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 104186 0.69 0.863388
Target:  5'- gCGGGUCGUcgGGCGGGacggcguccAGgcGCuCGCGc -3'
miRNA:   3'- -GCCCGGCAuuUCGCCU---------UCaaUG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 98142 0.69 0.863388
Target:  5'- gGcGGCCGUc-GGCGGcAAG--GCCGCGg -3'
miRNA:   3'- gC-CCGGCAuuUCGCC-UUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 53586 0.69 0.870197
Target:  5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3'
miRNA:   3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 51359 0.69 0.863388
Target:  5'- uGGGCUGUccGGCGcGGAGUacgcgcagGCCGUGc -3'
miRNA:   3'- gCCCGGCAuuUCGC-CUUCAa-------UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 3372 0.69 0.863388
Target:  5'- aGGGCCGcGAGcGCGGccGccaGCCGCGc -3'
miRNA:   3'- gCCCGGCaUUU-CGCCuuCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 2483 0.69 0.863388
Target:  5'- aGGGCuCGgggaAGAGCGGguGgu-CCGCGa -3'
miRNA:   3'- gCCCG-GCa---UUUCGCCuuCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 56147 0.69 0.839463
Target:  5'- gCGGGCCG-AGGGUGGcGGcaGCgGCGg -3'
miRNA:   3'- -GCCCGGCaUUUCGCCuUCaaUGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 12579 0.69 0.839463
Target:  5'- gGGGCCGaGAggggcgccuAGCGGAGGaUggacuucaGCCGCGc -3'
miRNA:   3'- gCCCGGCaUU---------UCGCCUUCaA--------UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 13101 0.69 0.839463
Target:  5'- gCGGGCuCGgcucgGGGGCGucGGcgGCCGCGg -3'
miRNA:   3'- -GCCCG-GCa----UUUCGCcuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 78530 0.69 0.863388
Target:  5'- gCGGaGgCGgcGAGgGGAAGgggaGCCGCGa -3'
miRNA:   3'- -GCC-CgGCauUUCgCCUUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 130565 0.69 0.855618
Target:  5'- gCGGcCCGccGGGCGGAAGcgccGCCGCGc -3'
miRNA:   3'- -GCCcGGCauUUCGCCUUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 115401 0.69 0.847641
Target:  5'- gCGGGUCGUcgaccgcGGGCGGcAGccgggGCCGCGg -3'
miRNA:   3'- -GCCCGGCAu------UUCGCCuUCaa---UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.