miRNA display CGI


Results 61 - 80 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 115401 0.69 0.847641
Target:  5'- gCGGGUCGUcgaccgcGGGCGGcAGccgggGCCGCGg -3'
miRNA:   3'- -GCCCGGCAu------UUCGCCuUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74348 0.69 0.855618
Target:  5'- -aGGCgCGgc-GGCGGAAGgggcgGCCGCGu -3'
miRNA:   3'- gcCCG-GCauuUCGCCUUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 2483 0.69 0.863388
Target:  5'- aGGGCuCGgggaAGAGCGGguGgu-CCGCGa -3'
miRNA:   3'- gCCCG-GCa---UUUCGCCuuCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 13101 0.69 0.839463
Target:  5'- gCGGGCuCGgcucgGGGGCGucGGcgGCCGCGg -3'
miRNA:   3'- -GCCCG-GCa----UUUCGCcuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98142 0.69 0.863388
Target:  5'- gGcGGCCGUc-GGCGGcAAG--GCCGCGg -3'
miRNA:   3'- gC-CCGGCAuuUCGCC-UUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98924 0.69 0.863388
Target:  5'- gGGGUCGgcu-GCGGggGgcAgCGCGu -3'
miRNA:   3'- gCCCGGCauuuCGCCuuCaaUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 52979 0.69 0.870943
Target:  5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3'
miRNA:   3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5'
23616 3' -53.9 NC_005261.1 + 68994 0.69 0.870943
Target:  5'- uCGGGCCGc---GCGGGc---GCCGCGg -3'
miRNA:   3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 232 0.69 0.878279
Target:  5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 125735 0.68 0.898918
Target:  5'- gGGGCCGccgcaagGGGGcCGGGgccAGggcUGCCGCGg -3'
miRNA:   3'- gCCCGGCa------UUUC-GCCU---UCa--AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 136389 0.68 0.898918
Target:  5'- aGGuGCCGggacugGGGGCGGAcguGGUgucggaGCCGCa -3'
miRNA:   3'- gCC-CGGCa-----UUUCGCCU---UCAa-----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 60409 0.68 0.898918
Target:  5'- cCGGGCCGgcccGGGCccGggGccGCCGCGc -3'
miRNA:   3'- -GCCCGGCau--UUCGc-CuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 34342 0.68 0.905327
Target:  5'- gGGGCCGg--GGCGGccgacggggccGGgcGCCGCGc -3'
miRNA:   3'- gCCCGGCauuUCGCCu----------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 79099 0.68 0.905327
Target:  5'- gGGGuuGcugcgGAGGCGGGAGaugUACCGg- -3'
miRNA:   3'- gCCCggCa----UUUCGCCUUCa--AUGGCgc -5'
23616 3' -53.9 NC_005261.1 + 33901 0.68 0.905327
Target:  5'- gGGGCgCGcguaUAAAGCGGG----GCCGCGu -3'
miRNA:   3'- gCCCG-GC----AUUUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74723 0.68 0.905327
Target:  5'- cCGGGCC-----GCGGcAGcgGCCGCGg -3'
miRNA:   3'- -GCCCGGcauuuCGCCuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74428 0.68 0.911495
Target:  5'- aGGGCCGaggAGAGCgcccccccggcgGGggGUgggggcGCCGCc -3'
miRNA:   3'- gCCCGGCa--UUUCG------------CCuuCAa-----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 68829 0.68 0.883281
Target:  5'- uGGGCCGU--GGCGGcccccccgucccgcGGGgacgcccucUGCCGCGg -3'
miRNA:   3'- gCCCGGCAuuUCGCC--------------UUCa--------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 70186 0.68 0.88539
Target:  5'- aGcGGCCGcugugGAGGCGGggGUUGaaGaCGg -3'
miRNA:   3'- gC-CCGGCa----UUUCGCCuuCAAUggC-GC- -5'
23616 3' -53.9 NC_005261.1 + 83039 0.68 0.88817
Target:  5'- aGGGCCGcucgccGCGGGAGggGgcucccugcgcgcccCCGCGg -3'
miRNA:   3'- gCCCGGCauuu--CGCCUUCaaU---------------GGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.