miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 978 0.72 0.718642
Target:  5'- gCGGGCCGcgcgcAGAGCGGAGGagACgGgGg -3'
miRNA:   3'- -GCCCGGCa----UUUCGCCUUCaaUGgCgC- -5'
23616 3' -53.9 NC_005261.1 + 69304 0.72 0.718642
Target:  5'- gGGcGCCGguggcggcgGGAGCGGggGUgACgGCGa -3'
miRNA:   3'- gCC-CGGCa--------UUUCGCCuuCAaUGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 32555 0.71 0.736608
Target:  5'- gCGGGCCGgcgcgcGUGGAAGUgcucuccucguCCGCGu -3'
miRNA:   3'- -GCCCGGCauuu--CGCCUUCAau---------GGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74806 0.71 0.738587
Target:  5'- uCGaGGCCcgcguGGCGGAGGUgGCCGCc -3'
miRNA:   3'- -GC-CCGGcauu-UCGCCUUCAaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 70348 0.71 0.738587
Target:  5'- gCGGGCCGggGAcCGGGAGgcGgCGCGc -3'
miRNA:   3'- -GCCCGGCauUUcGCCUUCaaUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 19385 0.71 0.748422
Target:  5'- -aGGCCGUAGuAGCGGGgcucGGUgaucggcccgugUGCCGCGc -3'
miRNA:   3'- gcCCGGCAUU-UCGCCU----UCA------------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 28597 0.71 0.7494
Target:  5'- gCGGGCCGcccgcgccgagcuGGCGGAgcuguggcgcauGGUgGCCGCGg -3'
miRNA:   3'- -GCCCGGCauu----------UCGCCU------------UCAaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 60238 0.71 0.756214
Target:  5'- aGGGCCGccuccgccgcGGCGGGAGcggcgGCCGUGa -3'
miRNA:   3'- gCCCGGCauu-------UCGCCUUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 28778 0.71 0.758152
Target:  5'- uGGGCCGcGgcGCGGgcGcucgcgGCCGCGg -3'
miRNA:   3'- gCCCGGCaUuuCGCCuuCaa----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 132075 0.71 0.758152
Target:  5'- uCGcGGCCGccgucgccgcUGccGCGGAGGgcgGCCGCGa -3'
miRNA:   3'- -GC-CCGGC----------AUuuCGCCUUCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 13707 0.71 0.763935
Target:  5'- gCGGGCUGggggcgGGGGUGGggGUgggggugggcuugGCCGCc -3'
miRNA:   3'- -GCCCGGCa-----UUUCGCCuuCAa------------UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 58693 0.71 0.767767
Target:  5'- cCGGGCCGUcAGGGCGcgccgcugaGAGGUgcgccACCGCc -3'
miRNA:   3'- -GCCCGGCA-UUUCGC---------CUUCAa----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 125278 0.71 0.767767
Target:  5'- gGGGCCGc----UGGAAGUcagGCCGCGg -3'
miRNA:   3'- gCCCGGCauuucGCCUUCAa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 92627 0.71 0.767767
Target:  5'- cCGGGCgCG-AGAGCGGGAccGggACCGgGa -3'
miRNA:   3'- -GCCCG-GCaUUUCGCCUU--CaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 98110 0.71 0.777259
Target:  5'- gCGGGCgGcGAGGCuGggGacGCCGCGg -3'
miRNA:   3'- -GCCCGgCaUUUCGcCuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 105235 0.7 0.795833
Target:  5'- cCGcGGCCGUGAucuGCGGcGGcauCCGCGc -3'
miRNA:   3'- -GC-CCGGCAUUu--CGCCuUCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 127798 0.7 0.795833
Target:  5'- gCGGGCCGgcgccGCGGcGGcggGCCGCu -3'
miRNA:   3'- -GCCCGGCauuu-CGCCuUCaa-UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 128124 0.7 0.795833
Target:  5'- uCGGGCCGagu-GCGGAgagaggcgacGGUcgccgggGCCGCGg -3'
miRNA:   3'- -GCCCGGCauuuCGCCU----------UCAa------UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 57186 0.7 0.804897
Target:  5'- gGGGUCGgcggGAAGgGGggGggggGCgCGCGg -3'
miRNA:   3'- gCCCGGCa---UUUCgCCuuCaa--UG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 72828 0.7 0.804897
Target:  5'- aGGGCCGcAAGGCGGucggccAGGgcGCCaGCGc -3'
miRNA:   3'- gCCCGGCaUUUCGCC------UUCaaUGG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.