Results 41 - 60 of 160 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 120939 | 0.7 | 0.813801 |
Target: 5'- cCGGGCgCGggAAGGUGGAGGcucgcgccCCGCGg -3' miRNA: 3'- -GCCCG-GCa-UUUCGCCUUCaau-----GGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 9619 | 0.7 | 0.822535 |
Target: 5'- gGGGUgGgcAGGCGGggGUggggGCUGgGu -3' miRNA: 3'- gCCCGgCauUUCGCCuuCAa---UGGCgC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 97018 | 0.7 | 0.831092 |
Target: 5'- gCGGGCCGUcgGGCGcgcccgGCCGCc -3' miRNA: 3'- -GCCCGGCAuuUCGCcuucaaUGGCGc -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 121189 | 0.7 | 0.831092 |
Target: 5'- gGGGCCGg--GGcCGGGcccGggGCCGCGg -3' miRNA: 3'- gCCCGGCauuUC-GCCUu--CaaUGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 56147 | 0.69 | 0.839463 |
Target: 5'- gCGGGCCG-AGGGUGGcGGcaGCgGCGg -3' miRNA: 3'- -GCCCGGCaUUUCGCCuUCaaUGgCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 12579 | 0.69 | 0.839463 |
Target: 5'- gGGGCCGaGAggggcgccuAGCGGAGGaUggacuucaGCCGCGc -3' miRNA: 3'- gCCCGGCaUU---------UCGCCUUCaA--------UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 13101 | 0.69 | 0.839463 |
Target: 5'- gCGGGCuCGgcucgGGGGCGucGGcgGCCGCGg -3' miRNA: 3'- -GCCCG-GCa----UUUCGCcuUCaaUGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 74863 | 0.69 | 0.839463 |
Target: 5'- cCGGGCgGagGAGGCGGAcGcgGCgGCGg -3' miRNA: 3'- -GCCCGgCa-UUUCGCCUuCaaUGgCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 62450 | 0.69 | 0.839463 |
Target: 5'- cCGGGCCccagcagcGGCGGAAGcaggcacACCGCGu -3' miRNA: 3'- -GCCCGGcauu----UCGCCUUCaa-----UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 115401 | 0.69 | 0.847641 |
Target: 5'- gCGGGUCGUcgaccgcGGGCGGcAGccgggGCCGCGg -3' miRNA: 3'- -GCCCGGCAu------UUCGCCuUCaa---UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 130565 | 0.69 | 0.855618 |
Target: 5'- gCGGcCCGccGGGCGGAAGcgccGCCGCGc -3' miRNA: 3'- -GCCcGGCauUUCGCCUUCaa--UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 74348 | 0.69 | 0.855618 |
Target: 5'- -aGGCgCGgc-GGCGGAAGgggcgGCCGCGu -3' miRNA: 3'- gcCCG-GCauuUCGCCUUCaa---UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 2483 | 0.69 | 0.863388 |
Target: 5'- aGGGCuCGgggaAGAGCGGguGgu-CCGCGa -3' miRNA: 3'- gCCCG-GCa---UUUCGCCuuCaauGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 3372 | 0.69 | 0.863388 |
Target: 5'- aGGGCCGcGAGcGCGGccGccaGCCGCGc -3' miRNA: 3'- gCCCGGCaUUU-CGCCuuCaa-UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 51359 | 0.69 | 0.863388 |
Target: 5'- uGGGCUGUccGGCGcGGAGUacgcgcagGCCGUGc -3' miRNA: 3'- gCCCGGCAuuUCGC-CUUCAa-------UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 98142 | 0.69 | 0.863388 |
Target: 5'- gGcGGCCGUc-GGCGGcAAG--GCCGCGg -3' miRNA: 3'- gC-CCGGCAuuUCGCC-UUCaaUGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 98924 | 0.69 | 0.863388 |
Target: 5'- gGGGUCGgcu-GCGGggGgcAgCGCGu -3' miRNA: 3'- gCCCGGCauuuCGCCuuCaaUgGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 104186 | 0.69 | 0.863388 |
Target: 5'- gCGGGUCGUcgGGCGGGacggcguccAGgcGCuCGCGc -3' miRNA: 3'- -GCCCGGCAuuUCGCCU---------UCaaUG-GCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 98738 | 0.69 | 0.863388 |
Target: 5'- aCGcGGCCGc---GCGGgcGUUgGCCGCGc -3' miRNA: 3'- -GC-CCGGCauuuCGCCuuCAA-UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 78530 | 0.69 | 0.863388 |
Target: 5'- gCGGaGgCGgcGAGgGGAAGgggaGCCGCGa -3' miRNA: 3'- -GCC-CgGCauUUCgCCUUCaa--UGGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home