miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 53586 0.69 0.870197
Target:  5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3'
miRNA:   3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 52979 0.69 0.870943
Target:  5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3'
miRNA:   3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5'
23616 3' -53.9 NC_005261.1 + 68994 0.69 0.870943
Target:  5'- uCGGGCCGc---GCGGGc---GCCGCGg -3'
miRNA:   3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 88172 0.69 0.876102
Target:  5'- cCGGGCCGgggcgacgccGGCGGcgccggcGAGgcggGCCGCGc -3'
miRNA:   3'- -GCCCGGCauu-------UCGCC-------UUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 232 0.69 0.878279
Target:  5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 137915 0.69 0.878279
Target:  5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 127338 0.69 0.878279
Target:  5'- gGGGCCGgagcGGCGGGgcgcuGGgc-CCGCGu -3'
miRNA:   3'- gCCCGGCauu-UCGCCU-----UCaauGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 68128 0.69 0.878279
Target:  5'- gCGGGCCGcGgcGCGGcg---ACCGCGc -3'
miRNA:   3'- -GCCCGGCaUuuCGCCuucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 2584 0.69 0.878279
Target:  5'- cCGGGCgGcacgcGGCGGAAGccGCCGuCGg -3'
miRNA:   3'- -GCCCGgCauu--UCGCCUUCaaUGGC-GC- -5'
23616 3' -53.9 NC_005261.1 + 68829 0.68 0.883281
Target:  5'- uGGGCCGU--GGCGGcccccccgucccgcGGGgacgcccucUGCCGCGg -3'
miRNA:   3'- gCCCGGCAuuUCGCC--------------UUCa--------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 30806 0.68 0.88539
Target:  5'- gGGGCCGgagGAGCuGggGggGCC-CGg -3'
miRNA:   3'- gCCCGGCau-UUCGcCuuCaaUGGcGC- -5'
23616 3' -53.9 NC_005261.1 + 70186 0.68 0.88539
Target:  5'- aGcGGCCGcugugGAGGCGGggGUUGaaGaCGg -3'
miRNA:   3'- gC-CCGGCa----UUUCGCCuuCAAUggC-GC- -5'
23616 3' -53.9 NC_005261.1 + 83039 0.68 0.88817
Target:  5'- aGGGCCGcucgccGCGGGAGggGgcucccugcgcgcccCCGCGg -3'
miRNA:   3'- gCCCGGCauuu--CGCCUUCaaU---------------GGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74668 0.68 0.892271
Target:  5'- -aGGCCGggGAcGCGGAcGcgACCGCGc -3'
miRNA:   3'- gcCCGGCauUU-CGCCUuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 5507 0.68 0.892271
Target:  5'- gGGGCCGcgGcAGCGGcGGcgagGCCGCc -3'
miRNA:   3'- gCCCGGCa-UuUCGCCuUCaa--UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 36555 0.68 0.892271
Target:  5'- gCGGggcgagccuaGCCGagcuGAGCGGggGcccGCCGCGg -3'
miRNA:   3'- -GCC----------CGGCau--UUCGCCuuCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 8833 0.68 0.892271
Target:  5'- cCGGGCaagGGGGCGGGGacagGCCGUGg -3'
miRNA:   3'- -GCCCGgcaUUUCGCCUUcaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 2753 0.68 0.892271
Target:  5'- gCGGGCCGUcgcGGCGGGccucgAGgc-CCGCc -3'
miRNA:   3'- -GCCCGGCAuu-UCGCCU-----UCaauGGCGc -5'
23616 3' -53.9 NC_005261.1 + 136389 0.68 0.898918
Target:  5'- aGGuGCCGggacugGGGGCGGAcguGGUgucggaGCCGCa -3'
miRNA:   3'- gCC-CGGCa-----UUUCGCCU---UCAa-----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 125735 0.68 0.898918
Target:  5'- gGGGCCGccgcaagGGGGcCGGGgccAGggcUGCCGCGg -3'
miRNA:   3'- gCCCGGCa------UUUC-GCCU---UCa--AUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.