Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 125735 | 0.68 | 0.898918 |
Target: 5'- gGGGCCGccgcaagGGGGcCGGGgccAGggcUGCCGCGg -3' miRNA: 3'- gCCCGGCa------UUUC-GCCU---UCa--AUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 97625 | 0.68 | 0.898918 |
Target: 5'- gCGGGCgGagcGGGCGGAgcGGgcgcgggUGCCGCa -3' miRNA: 3'- -GCCCGgCau-UUCGCCU--UCa------AUGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 40370 | 0.68 | 0.898918 |
Target: 5'- gCGGGuugagguucauCCGgagGAAGCGGGAGgacacGCUGCGc -3' miRNA: 3'- -GCCC-----------GGCa--UUUCGCCUUCaa---UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 34342 | 0.68 | 0.905327 |
Target: 5'- gGGGCCGg--GGCGGccgacggggccGGgcGCCGCGc -3' miRNA: 3'- gCCCGGCauuUCGCCu----------UCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 74723 | 0.68 | 0.905327 |
Target: 5'- cCGGGCC-----GCGGcAGcgGCCGCGg -3' miRNA: 3'- -GCCCGGcauuuCGCCuUCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 33901 | 0.68 | 0.905327 |
Target: 5'- gGGGCgCGcguaUAAAGCGGG----GCCGCGu -3' miRNA: 3'- gCCCG-GC----AUUUCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 79099 | 0.68 | 0.905327 |
Target: 5'- gGGGuuGcugcgGAGGCGGGAGaugUACCGg- -3' miRNA: 3'- gCCCggCa----UUUCGCCUUCa--AUGGCgc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 74428 | 0.68 | 0.911495 |
Target: 5'- aGGGCCGaggAGAGCgcccccccggcgGGggGUgggggcGCCGCc -3' miRNA: 3'- gCCCGGCa--UUUCG------------CCuuCAa-----UGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 108734 | 0.68 | 0.911495 |
Target: 5'- gCGGGCC----AGCGGcGGc-GCCGCGg -3' miRNA: 3'- -GCCCGGcauuUCGCCuUCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 102301 | 0.68 | 0.911495 |
Target: 5'- gCGGGUCGUAGccGCGcGccGcgGCCGCGg -3' miRNA: 3'- -GCCCGGCAUUu-CGC-CuuCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 119561 | 0.68 | 0.911495 |
Target: 5'- gGGGCCGc-AAGUGGAugc-GCUGCGa -3' miRNA: 3'- gCCCGGCauUUCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 15442 | 0.68 | 0.911495 |
Target: 5'- gCGGGCCGgcGA-UGGAgaagagcacguGGUUcucgACCGCGg -3' miRNA: 3'- -GCCCGGCauUUcGCCU-----------UCAA----UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 2413 | 0.68 | 0.911495 |
Target: 5'- gCGGGCCccgc-GCGGcGGcggGCCGCGa -3' miRNA: 3'- -GCCCGGcauuuCGCCuUCaa-UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 14041 | 0.68 | 0.911495 |
Target: 5'- gGGGCCaugcGAGCGGuccgcAGgcagGCCGCGu -3' miRNA: 3'- gCCCGGcau-UUCGCCu----UCaa--UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 63472 | 0.67 | 0.917421 |
Target: 5'- aGGGUugcaCGgcGAGCGGAAGUa--CGCa -3' miRNA: 3'- gCCCG----GCauUUCGCCUUCAaugGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 11471 | 0.67 | 0.917421 |
Target: 5'- gCGGGCgCGgaggggcGGGGCGGggGU-GCCGg- -3' miRNA: 3'- -GCCCG-GCa------UUUCGCCuuCAaUGGCgc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 47767 | 0.67 | 0.917421 |
Target: 5'- cCGaGGCgCGUcucccgguaGAAGCGGAAGggcccgauCCGCGc -3' miRNA: 3'- -GC-CCG-GCA---------UUUCGCCUUCaau-----GGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 13403 | 0.67 | 0.917421 |
Target: 5'- uCGGaGCgGUAGGGCGacgcGAAGgcgcACCGCGc -3' miRNA: 3'- -GCC-CGgCAUUUCGC----CUUCaa--UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 128891 | 0.67 | 0.919723 |
Target: 5'- gGGGCCGgguggGAGGCGGgcGUcgaagugcccuucuuUGCCaCGu -3' miRNA: 3'- gCCCGGCa----UUUCGCCuuCA---------------AUGGcGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 97987 | 0.67 | 0.923103 |
Target: 5'- gGGGagaGUGAAGUGGGAG--GCgGCGg -3' miRNA: 3'- gCCCgg-CAUUUCGCCUUCaaUGgCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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