miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 57395 0.67 0.923103
Target:  5'- uCGGGgagcgcgcCCGUGAuccGCGGccGgcGCCGCGa -3'
miRNA:   3'- -GCCC--------GGCAUUu--CGCCuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 99459 0.67 0.923103
Target:  5'- gCGGGCCGacccGCGGcGGcgcugGCCGCu -3'
miRNA:   3'- -GCCCGGCauuuCGCCuUCaa---UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 118162 0.67 0.928539
Target:  5'- -uGGCCGUcgcGGCGGGGcUUGCCGUc -3'
miRNA:   3'- gcCCGGCAuu-UCGCCUUcAAUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 106560 0.67 0.928539
Target:  5'- cCGGGCCGgcGcGCGccggccccGggGccGCCGCGc -3'
miRNA:   3'- -GCCCGGCauUuCGC--------CuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 127720 0.67 0.928539
Target:  5'- gCGuGGCCugccugGUAGcgggagcuuggcGGCGGGAGcggGCCGCGg -3'
miRNA:   3'- -GC-CCGG------CAUU------------UCGCCUUCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 23832 0.67 0.928539
Target:  5'- gCGGGCCGgcUAGGGUGGGcuc-GCCGgGg -3'
miRNA:   3'- -GCCCGGC--AUUUCGCCUucaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 23775 0.67 0.928539
Target:  5'- gCGGGCCGgcUAGGGUGGGcuc-GCCGgGg -3'
miRNA:   3'- -GCCCGGC--AUUUCGCCUucaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 458 0.67 0.933731
Target:  5'- gGGGCCGcGAcggccGGCGGGA--UGgCGCGg -3'
miRNA:   3'- gCCCGGCaUU-----UCGCCUUcaAUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 138129 0.67 0.933731
Target:  5'- gGGGCCGcGAcggccGGCGGGA--UGgCGCGg -3'
miRNA:   3'- gCCCGGCaUU-----UCGCCUUcaAUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 44451 0.67 0.933731
Target:  5'- uCGcGGCUGUgGGAGCaGGAGcUGCUGCGc -3'
miRNA:   3'- -GC-CCGGCA-UUUCGcCUUCaAUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 15958 0.67 0.933731
Target:  5'- gGGGCgaGUGgcGGGCGGggGagggcccggGCCGCu -3'
miRNA:   3'- gCCCGg-CAU--UUCGCCuuCaa-------UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 12311 0.67 0.938193
Target:  5'- aCGGGCgCGUAGccGGCGGGcgcgcgcuuggccGGcgcgGCCGCc -3'
miRNA:   3'- -GCCCG-GCAUU--UCGCCU-------------UCaa--UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 75183 0.67 0.938193
Target:  5'- aCGGGCgCaUGucGCGGAccuucauGGcgGCCGCGg -3'
miRNA:   3'- -GCCCG-GcAUuuCGCCU-------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 31047 0.67 0.938677
Target:  5'- cCGGGUCcccagcgcGGCGGGAGccGCCGCu -3'
miRNA:   3'- -GCCCGGcauu----UCGCCUUCaaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 30759 0.67 0.938677
Target:  5'- cCGGGCCcUAGuccgGGCcGGAGcccgGCCGCGg -3'
miRNA:   3'- -GCCCGGcAUU----UCGcCUUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 21230 0.67 0.938677
Target:  5'- gCGGGcCCGUcggcuGGCGGcuuuucAGGgcgUGCCGCa -3'
miRNA:   3'- -GCCC-GGCAuu---UCGCC------UUCa--AUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 531 0.67 0.938677
Target:  5'- gCGGGCgGggggcAGGGCGGAcggcggcucGGccGCCGCGc -3'
miRNA:   3'- -GCCCGgCa----UUUCGCCU---------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 127870 0.67 0.938677
Target:  5'- aGGGCac--GAGCGGGAGUcgcGCCgGCGc -3'
miRNA:   3'- gCCCGgcauUUCGCCUUCAa--UGG-CGC- -5'
23616 3' -53.9 NC_005261.1 + 125815 0.67 0.938677
Target:  5'- gGGGCCGccgcGAGCGGGGccggACCGgGc -3'
miRNA:   3'- gCCCGGCau--UUCGCCUUcaa-UGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 98049 0.67 0.938677
Target:  5'- gGcGGCCGc-GGGCGGc-GggACCGCGg -3'
miRNA:   3'- gC-CCGGCauUUCGCCuuCaaUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.