miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 88012 0.66 0.952063
Target:  5'- gCGGGCCcguUAAAGCGGccGgcggUGCCuggggGCGg -3'
miRNA:   3'- -GCCCGGc--AUUUCGCCuuCa---AUGG-----CGC- -5'
23616 3' -53.9 NC_005261.1 + 119289 0.66 0.952063
Target:  5'- gGGGCuCGccgagGAAGCGGAGGgcgagGCCuCGc -3'
miRNA:   3'- gCCCG-GCa----UUUCGCCUUCaa---UGGcGC- -5'
23616 3' -53.9 NC_005261.1 + 29258 0.66 0.952063
Target:  5'- aCGGGCCGccgccGCuGGAGGgc-CCGCu -3'
miRNA:   3'- -GCCCGGCauuu-CG-CCUUCaauGGCGc -5'
23616 3' -53.9 NC_005261.1 + 37274 0.66 0.952063
Target:  5'- cCGaGCCGUGccGCGGcgaccuGUUGCuCGCGg -3'
miRNA:   3'- -GCcCGGCAUuuCGCCuu----CAAUG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 98443 0.66 0.947841
Target:  5'- cCGGGCCGguAGGCGGcgc---CCGCa -3'
miRNA:   3'- -GCCCGGCauUUCGCCuucaauGGCGc -5'
23616 3' -53.9 NC_005261.1 + 28834 0.66 0.947841
Target:  5'- gGcGGCCGcggcUGAGGCGGccGUcgugGCCGCc -3'
miRNA:   3'- gC-CCGGC----AUUUCGCCuuCAa---UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 22779 0.66 0.947841
Target:  5'- gCGGGCCccgcGAGaaGGggGUUGUCGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCg-CCuuCAAUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 80065 0.66 0.94338
Target:  5'- gCGGGCgCGggGGGCGuGggGga--CGCGg -3'
miRNA:   3'- -GCCCG-GCauUUCGC-CuuCaaugGCGC- -5'
23616 3' -53.9 NC_005261.1 + 113545 0.66 0.94338
Target:  5'- gGGGCCGUGcgcGCGcuGG--ACCGCGa -3'
miRNA:   3'- gCCCGGCAUuu-CGCcuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 46111 0.66 0.94338
Target:  5'- gGGGCCGUGGuccGCGuccagcAGGUcGCCGCc -3'
miRNA:   3'- gCCCGGCAUUu--CGCc-----UUCAaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 92804 0.66 0.94338
Target:  5'- cCGGucGCCGggcgcGCGGgcGUgggACCGCGc -3'
miRNA:   3'- -GCC--CGGCauuu-CGCCuuCAa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 121436 0.66 0.94338
Target:  5'- gGGGCgGcGGGGCGGGcauGggGCCGuCGa -3'
miRNA:   3'- gCCCGgCaUUUCGCCUu--CaaUGGC-GC- -5'
23616 3' -53.9 NC_005261.1 + 121499 0.66 0.94338
Target:  5'- gGGGCgGcGGGGCGGGcauGggGCCGuCGa -3'
miRNA:   3'- gCCCGgCaUUUCGCCUu--CaaUGGC-GC- -5'
23616 3' -53.9 NC_005261.1 + 31047 0.67 0.938677
Target:  5'- cCGGGUCcccagcgcGGCGGGAGccGCCGCu -3'
miRNA:   3'- -GCCCGGcauu----UCGCCUUCaaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 38270 0.67 0.938677
Target:  5'- uGGGCUG-GGGGCGGcuGgUGCaCGCGg -3'
miRNA:   3'- gCCCGGCaUUUCGCCuuCaAUG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 89836 0.67 0.938677
Target:  5'- uCGcGGCCG---GGcCGGAGG--GCCGCGg -3'
miRNA:   3'- -GC-CCGGCauuUC-GCCUUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 105352 0.67 0.938677
Target:  5'- -cGGCCGUGAGGCaGGccGUgacagGCgGCGc -3'
miRNA:   3'- gcCCGGCAUUUCG-CCuuCAa----UGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 129694 0.67 0.938677
Target:  5'- uCGGGCCGgggccGGGGcCGGAGGcaggcCCGCc -3'
miRNA:   3'- -GCCCGGCa----UUUC-GCCUUCaau--GGCGc -5'
23616 3' -53.9 NC_005261.1 + 138202 0.67 0.938677
Target:  5'- gCGGGCgGggggcAGGGCGGAcggcggcucGGccGCCGCGc -3'
miRNA:   3'- -GCCCGgCa----UUUCGCCU---------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 30759 0.67 0.938677
Target:  5'- cCGGGCCcUAGuccgGGCcGGAGcccgGCCGCGg -3'
miRNA:   3'- -GCCCGGcAUU----UCGcCUUCaa--UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.