miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 31047 0.67 0.938677
Target:  5'- cCGGGUCcccagcgcGGCGGGAGccGCCGCu -3'
miRNA:   3'- -GCCCGGcauu----UCGCCUUCaaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 86490 0.67 0.938677
Target:  5'- cCGGGCCGgcGccugucugcGGCaGggGcUUGCCGUc -3'
miRNA:   3'- -GCCCGGCauU---------UCGcCuuC-AAUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 138202 0.67 0.938677
Target:  5'- gCGGGCgGggggcAGGGCGGAcggcggcucGGccGCCGCGc -3'
miRNA:   3'- -GCCCGgCa----UUUCGCCU---------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 129694 0.67 0.938677
Target:  5'- uCGGGCCGgggccGGGGcCGGAGGcaggcCCGCc -3'
miRNA:   3'- -GCCCGGCa----UUUC-GCCUUCaau--GGCGc -5'
23616 3' -53.9 NC_005261.1 + 105352 0.67 0.938677
Target:  5'- -cGGCCGUGAGGCaGGccGUgacagGCgGCGc -3'
miRNA:   3'- gcCCGGCAUUUCG-CCuuCAa----UGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 89836 0.67 0.938677
Target:  5'- uCGcGGCCG---GGcCGGAGG--GCCGCGg -3'
miRNA:   3'- -GC-CCGGCauuUC-GCCUUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 38270 0.67 0.938677
Target:  5'- uGGGCUG-GGGGCGGcuGgUGCaCGCGg -3'
miRNA:   3'- gCCCGGCaUUUCGCCuuCaAUG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 75183 0.67 0.938193
Target:  5'- aCGGGCgCaUGucGCGGAccuucauGGcgGCCGCGg -3'
miRNA:   3'- -GCCCG-GcAUuuCGCCU-------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 12311 0.67 0.938193
Target:  5'- aCGGGCgCGUAGccGGCGGGcgcgcgcuuggccGGcgcgGCCGCc -3'
miRNA:   3'- -GCCCG-GCAUU--UCGCCU-------------UCaa--UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 458 0.67 0.933731
Target:  5'- gGGGCCGcGAcggccGGCGGGA--UGgCGCGg -3'
miRNA:   3'- gCCCGGCaUU-----UCGCCUUcaAUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 15958 0.67 0.933731
Target:  5'- gGGGCgaGUGgcGGGCGGggGagggcccggGCCGCu -3'
miRNA:   3'- gCCCGg-CAU--UUCGCCuuCaa-------UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 44451 0.67 0.933731
Target:  5'- uCGcGGCUGUgGGAGCaGGAGcUGCUGCGc -3'
miRNA:   3'- -GC-CCGGCA-UUUCGcCUUCaAUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 138129 0.67 0.933731
Target:  5'- gGGGCCGcGAcggccGGCGGGA--UGgCGCGg -3'
miRNA:   3'- gCCCGGCaUU-----UCGCCUUcaAUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 23775 0.67 0.928539
Target:  5'- gCGGGCCGgcUAGGGUGGGcuc-GCCGgGg -3'
miRNA:   3'- -GCCCGGC--AUUUCGCCUucaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 23832 0.67 0.928539
Target:  5'- gCGGGCCGgcUAGGGUGGGcuc-GCCGgGg -3'
miRNA:   3'- -GCCCGGC--AUUUCGCCUucaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 127720 0.67 0.928539
Target:  5'- gCGuGGCCugccugGUAGcgggagcuuggcGGCGGGAGcggGCCGCGg -3'
miRNA:   3'- -GC-CCGG------CAUU------------UCGCCUUCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 106560 0.67 0.928539
Target:  5'- cCGGGCCGgcGcGCGccggccccGggGccGCCGCGc -3'
miRNA:   3'- -GCCCGGCauUuCGC--------CuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 118162 0.67 0.928539
Target:  5'- -uGGCCGUcgcGGCGGGGcUUGCCGUc -3'
miRNA:   3'- gcCCGGCAuu-UCGCCUUcAAUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 99459 0.67 0.923103
Target:  5'- gCGGGCCGacccGCGGcGGcgcugGCCGCu -3'
miRNA:   3'- -GCCCGGCauuuCGCCuUCaa---UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 97987 0.67 0.923103
Target:  5'- gGGGagaGUGAAGUGGGAG--GCgGCGg -3'
miRNA:   3'- gCCCgg-CAUUUCGCCUUCaaUGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.