Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 97625 | 0.68 | 0.898918 |
Target: 5'- gCGGGCgGagcGGGCGGAgcGGgcgcgggUGCCGCa -3' miRNA: 3'- -GCCCGgCau-UUCGCCU--UCa------AUGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 40370 | 0.68 | 0.898918 |
Target: 5'- gCGGGuugagguucauCCGgagGAAGCGGGAGgacacGCUGCGc -3' miRNA: 3'- -GCCC-----------GGCa--UUUCGCCUUCaa---UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 2753 | 0.68 | 0.892271 |
Target: 5'- gCGGGCCGUcgcGGCGGGccucgAGgc-CCGCc -3' miRNA: 3'- -GCCCGGCAuu-UCGCCU-----UCaauGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 5507 | 0.68 | 0.892271 |
Target: 5'- gGGGCCGcgGcAGCGGcGGcgagGCCGCc -3' miRNA: 3'- gCCCGGCa-UuUCGCCuUCaa--UGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 8833 | 0.68 | 0.892271 |
Target: 5'- cCGGGCaagGGGGCGGGGacagGCCGUGg -3' miRNA: 3'- -GCCCGgcaUUUCGCCUUcaa-UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 36555 | 0.68 | 0.892271 |
Target: 5'- gCGGggcgagccuaGCCGagcuGAGCGGggGcccGCCGCGg -3' miRNA: 3'- -GCC----------CGGCau--UUCGCCuuCaa-UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 74668 | 0.68 | 0.892271 |
Target: 5'- -aGGCCGggGAcGCGGAcGcgACCGCGc -3' miRNA: 3'- gcCCGGCauUU-CGCCUuCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 83039 | 0.68 | 0.88817 |
Target: 5'- aGGGCCGcucgccGCGGGAGggGgcucccugcgcgcccCCGCGg -3' miRNA: 3'- gCCCGGCauuu--CGCCUUCaaU---------------GGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 30806 | 0.68 | 0.88539 |
Target: 5'- gGGGCCGgagGAGCuGggGggGCC-CGg -3' miRNA: 3'- gCCCGGCau-UUCGcCuuCaaUGGcGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 70186 | 0.68 | 0.88539 |
Target: 5'- aGcGGCCGcugugGAGGCGGggGUUGaaGaCGg -3' miRNA: 3'- gC-CCGGCa----UUUCGCCuuCAAUggC-GC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68829 | 0.68 | 0.883281 |
Target: 5'- uGGGCCGU--GGCGGcccccccgucccgcGGGgacgcccucUGCCGCGg -3' miRNA: 3'- gCCCGGCAuuUCGCC--------------UUCa--------AUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 232 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3' miRNA: 3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 137915 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCccgcGAGCGGGcccgGCUGCGg -3' miRNA: 3'- -GCCCGGcau-UUCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68128 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCGcGgcGCGGcg---ACCGCGc -3' miRNA: 3'- -GCCCGGCaUuuCGCCuucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 127338 | 0.69 | 0.878279 |
Target: 5'- gGGGCCGgagcGGCGGGgcgcuGGgc-CCGCGu -3' miRNA: 3'- gCCCGGCauu-UCGCCU-----UCaauGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 2584 | 0.69 | 0.878279 |
Target: 5'- cCGGGCgGcacgcGGCGGAAGccGCCGuCGg -3' miRNA: 3'- -GCCCGgCauu--UCGCCUUCaaUGGC-GC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 88172 | 0.69 | 0.876102 |
Target: 5'- cCGGGCCGgggcgacgccGGCGGcgccggcGAGgcggGCCGCGc -3' miRNA: 3'- -GCCCGGCauu-------UCGCC-------UUCaa--UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68994 | 0.69 | 0.870943 |
Target: 5'- uCGGGCCGc---GCGGGc---GCCGCGg -3' miRNA: 3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 52979 | 0.69 | 0.870943 |
Target: 5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3' miRNA: 3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 53586 | 0.69 | 0.870197 |
Target: 5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3' miRNA: 3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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