miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 15442 0.68 0.911495
Target:  5'- gCGGGCCGgcGA-UGGAgaagagcacguGGUUcucgACCGCGg -3'
miRNA:   3'- -GCCCGGCauUUcGCCU-----------UCAA----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 15958 0.67 0.933731
Target:  5'- gGGGCgaGUGgcGGGCGGggGagggcccggGCCGCu -3'
miRNA:   3'- gCCCGg-CAU--UUCGCCuuCaa-------UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 16175 0.75 0.554192
Target:  5'- gGGGCgCGggcguGGCGGggGUgggcggggGCCGCGu -3'
miRNA:   3'- gCCCG-GCauu--UCGCCuuCAa-------UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 19385 0.71 0.748422
Target:  5'- -aGGCCGUAGuAGCGGGgcucGGUgaucggcccgugUGCCGCGc -3'
miRNA:   3'- gcCCGGCAUU-UCGCCU----UCA------------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 20277 0.74 0.59516
Target:  5'- cCGGGUCGUGucGCGGggGcgcgcUUGCgGCa -3'
miRNA:   3'- -GCCCGGCAUuuCGCCuuC-----AAUGgCGc -5'
23616 3' -53.9 NC_005261.1 + 21230 0.67 0.938677
Target:  5'- gCGGGcCCGUcggcuGGCGGcuuuucAGGgcgUGCCGCa -3'
miRNA:   3'- -GCCC-GGCAuu---UCGCC------UUCa--AUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 21812 0.66 0.963333
Target:  5'- cCGGGCCGggcccGCGGcGGgcGCgCGUGc -3'
miRNA:   3'- -GCCCGGCauuu-CGCCuUCaaUG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 22708 0.66 0.963333
Target:  5'- aCGaGGCCGUcgaGGAGcCGGAGG--ACCaGCGc -3'
miRNA:   3'- -GC-CCGGCA---UUUC-GCCUUCaaUGG-CGC- -5'
23616 3' -53.9 NC_005261.1 + 22779 0.66 0.947841
Target:  5'- gCGGGCCccgcGAGaaGGggGUUGUCGCGg -3'
miRNA:   3'- -GCCCGGcau-UUCg-CCuuCAAUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 22968 0.66 0.959805
Target:  5'- aCGaGGCCGaGGAcCGGGAGgagGCgGCGg -3'
miRNA:   3'- -GC-CCGGCaUUUcGCCUUCaa-UGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 23716 0.66 0.95605
Target:  5'- uCGGG-UGgcAAGCGGGug--GCCGCGc -3'
miRNA:   3'- -GCCCgGCauUUCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 23775 0.67 0.928539
Target:  5'- gCGGGCCGgcUAGGGUGGGcuc-GCCGgGg -3'
miRNA:   3'- -GCCCGGC--AUUUCGCCUucaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 23832 0.67 0.928539
Target:  5'- gCGGGCCGgcUAGGGUGGGcuc-GCCGgGg -3'
miRNA:   3'- -GCCCGGC--AUUUCGCCUucaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 24116 0.73 0.657283
Target:  5'- cCGGGCCc-GAGGCGGggGUggggGCUGgGu -3'
miRNA:   3'- -GCCCGGcaUUUCGCCuuCAa---UGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 28257 0.67 0.938677
Target:  5'- gGGGCUGcucgggGGGGCGcu-GUUGCCGCc -3'
miRNA:   3'- gCCCGGCa-----UUUCGCcuuCAAUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 28597 0.71 0.7494
Target:  5'- gCGGGCCGcccgcgccgagcuGGCGGAgcuguggcgcauGGUgGCCGCGg -3'
miRNA:   3'- -GCCCGGCauu----------UCGCCU------------UCAaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 28778 0.71 0.758152
Target:  5'- uGGGCCGcGgcGCGGgcGcucgcgGCCGCGg -3'
miRNA:   3'- gCCCGGCaUuuCGCCuuCaa----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 28834 0.66 0.947841
Target:  5'- gGcGGCCGcggcUGAGGCGGccGUcgugGCCGCc -3'
miRNA:   3'- gC-CCGGC----AUUUCGCCuuCAa---UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 29258 0.66 0.952063
Target:  5'- aCGGGCCGccgccGCuGGAGGgc-CCGCu -3'
miRNA:   3'- -GCCCGGCauuu-CG-CCUUCaauGGCGc -5'
23616 3' -53.9 NC_005261.1 + 30759 0.67 0.938677
Target:  5'- cCGGGCCcUAGuccgGGCcGGAGcccgGCCGCGg -3'
miRNA:   3'- -GCCCGGcAUU----UCGcCUUCaa--UGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.