miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 51359 0.69 0.863388
Target:  5'- uGGGCUGUccGGCGcGGAGUacgcgcagGCCGUGc -3'
miRNA:   3'- gCCCGGCAuuUCGC-CUUCAa-------UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 52979 0.69 0.870943
Target:  5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3'
miRNA:   3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5'
23616 3' -53.9 NC_005261.1 + 53586 0.69 0.870197
Target:  5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3'
miRNA:   3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 54151 0.73 0.677915
Target:  5'- aCGcGGCCGUGc-GCGG-GGUUGCCGgGa -3'
miRNA:   3'- -GC-CCGGCAUuuCGCCuUCAAUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 56147 0.69 0.839463
Target:  5'- gCGGGCCG-AGGGUGGcGGcaGCgGCGg -3'
miRNA:   3'- -GCCCGGCaUUUCGCCuUCaaUGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 57186 0.7 0.804897
Target:  5'- gGGGUCGgcggGAAGgGGggGggggGCgCGCGg -3'
miRNA:   3'- gCCCGGCa---UUUCgCCuuCaa--UG-GCGC- -5'
23616 3' -53.9 NC_005261.1 + 57395 0.67 0.923103
Target:  5'- uCGGGgagcgcgcCCGUGAuccGCGGccGgcGCCGCGa -3'
miRNA:   3'- -GCCC--------GGCAUUu--CGCCuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 58693 0.71 0.767767
Target:  5'- cCGGGCCGUcAGGGCGcgccgcugaGAGGUgcgccACCGCc -3'
miRNA:   3'- -GCCCGGCA-UUUCGC---------CUUCAa----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 60238 0.71 0.756214
Target:  5'- aGGGCCGccuccgccgcGGCGGGAGcggcgGCCGUGa -3'
miRNA:   3'- gCCCGGCauu-------UCGCCUUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 60409 0.68 0.898918
Target:  5'- cCGGGCCGgcccGGGCccGggGccGCCGCGc -3'
miRNA:   3'- -GCCCGGCau--UUCGc-CuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 62450 0.69 0.839463
Target:  5'- cCGGGCCccagcagcGGCGGAAGcaggcacACCGCGu -3'
miRNA:   3'- -GCCCGGcauu----UCGCCUUCaa-----UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 62505 0.76 0.494492
Target:  5'- aCGGGcCCGUGuucuGCaGGAAGgcGCCGCGc -3'
miRNA:   3'- -GCCC-GGCAUuu--CG-CCUUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 63271 0.66 0.952063
Target:  5'- gGGGCUGUAcacCGGcGAGgcGCCGCu -3'
miRNA:   3'- gCCCGGCAUuucGCC-UUCaaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 63472 0.67 0.917421
Target:  5'- aGGGUugcaCGgcGAGCGGAAGUa--CGCa -3'
miRNA:   3'- gCCCG----GCauUUCGCCUUCAaugGCGc -5'
23616 3' -53.9 NC_005261.1 + 65820 0.66 0.95605
Target:  5'- cCGGGCgGc--GGCGcGAAGcugcccgagUGCCGCGa -3'
miRNA:   3'- -GCCCGgCauuUCGC-CUUCa--------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 68128 0.69 0.878279
Target:  5'- gCGGGCCGcGgcGCGGcg---ACCGCGc -3'
miRNA:   3'- -GCCCGGCaUuuCGCCuucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 68592 0.74 0.626201
Target:  5'- gCGGGCCGcgGGAGCGGGGccgACgGCGu -3'
miRNA:   3'- -GCCCGGCa-UUUCGCCUUcaaUGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 68829 0.68 0.883281
Target:  5'- uGGGCCGU--GGCGGcccccccgucccgcGGGgacgcccucUGCCGCGg -3'
miRNA:   3'- gCCCGGCAuuUCGCC--------------UUCa--------AUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 68994 0.69 0.870943
Target:  5'- uCGGGCCGc---GCGGGc---GCCGCGg -3'
miRNA:   3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 69304 0.72 0.718642
Target:  5'- gGGcGCCGguggcggcgGGAGCGGggGUgACgGCGa -3'
miRNA:   3'- gCC-CGGCa--------UUUCGCCuuCAaUGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.