miRNA display CGI


Results 81 - 100 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 70186 0.68 0.88539
Target:  5'- aGcGGCCGcugugGAGGCGGggGUUGaaGaCGg -3'
miRNA:   3'- gC-CCGGCa----UUUCGCCuuCAAUggC-GC- -5'
23616 3' -53.9 NC_005261.1 + 70348 0.71 0.738587
Target:  5'- gCGGGCCGggGAcCGGGAGgcGgCGCGc -3'
miRNA:   3'- -GCCCGGCauUUcGCCUUCaaUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 71627 0.66 0.959805
Target:  5'- gCGGGcCCGggcGGCGGGAaaacGCCGCc -3'
miRNA:   3'- -GCCC-GGCauuUCGCCUUcaa-UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 72828 0.7 0.804897
Target:  5'- aGGGCCGcAAGGCGGucggccAGGgcGCCaGCGc -3'
miRNA:   3'- gCCCGGCaUUUCGCC------UUCaaUGG-CGC- -5'
23616 3' -53.9 NC_005261.1 + 73580 0.75 0.544071
Target:  5'- aCGGGCCcccccgcGGCGGAGGcggcgGCCGCGa -3'
miRNA:   3'- -GCCCGGcauu---UCGCCUUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 73971 0.74 0.574592
Target:  5'- cCGGGCCGUcugccucaucguGGAGCuGAAGacgUGCCGCu -3'
miRNA:   3'- -GCCCGGCA------------UUUCGcCUUCa--AUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 74348 0.69 0.855618
Target:  5'- -aGGCgCGgc-GGCGGAAGgggcgGCCGCGu -3'
miRNA:   3'- gcCCG-GCauuUCGCCUUCaa---UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74428 0.68 0.911495
Target:  5'- aGGGCCGaggAGAGCgcccccccggcgGGggGUgggggcGCCGCc -3'
miRNA:   3'- gCCCGGCa--UUUCG------------CCuuCAa-----UGGCGc -5'
23616 3' -53.9 NC_005261.1 + 74668 0.68 0.892271
Target:  5'- -aGGCCGggGAcGCGGAcGcgACCGCGc -3'
miRNA:   3'- gcCCGGCauUU-CGCCUuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74723 0.68 0.905327
Target:  5'- cCGGGCC-----GCGGcAGcgGCCGCGg -3'
miRNA:   3'- -GCCCGGcauuuCGCCuUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 74806 0.71 0.738587
Target:  5'- uCGaGGCCcgcguGGCGGAGGUgGCCGCc -3'
miRNA:   3'- -GC-CCGGcauu-UCGCCUUCAaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 74863 0.69 0.839463
Target:  5'- cCGGGCgGagGAGGCGGAcGcgGCgGCGg -3'
miRNA:   3'- -GCCCGgCa-UUUCGCCUuCaaUGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 75183 0.67 0.938193
Target:  5'- aCGGGCgCaUGucGCGGAccuucauGGcgGCCGCGg -3'
miRNA:   3'- -GCCCG-GcAUuuCGCCU-------UCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 78530 0.69 0.863388
Target:  5'- gCGGaGgCGgcGAGgGGAAGgggaGCCGCGa -3'
miRNA:   3'- -GCC-CgGCauUUCgCCUUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 79099 0.68 0.905327
Target:  5'- gGGGuuGcugcgGAGGCGGGAGaugUACCGg- -3'
miRNA:   3'- gCCCggCa----UUUCGCCUUCa--AUGGCgc -5'
23616 3' -53.9 NC_005261.1 + 80065 0.66 0.94338
Target:  5'- gCGGGCgCGggGGGCGuGggGga--CGCGg -3'
miRNA:   3'- -GCCCG-GCauUUCGC-CuuCaaugGCGC- -5'
23616 3' -53.9 NC_005261.1 + 80430 1.1 0.003812
Target:  5'- gCGGGCCGUAAAGCGGAAGUUACCGCGg -3'
miRNA:   3'- -GCCCGGCAUUUCGCCUUCAAUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 81341 0.75 0.524017
Target:  5'- gGGGCCGUcggcGGGGCGGggGcUugCGgGg -3'
miRNA:   3'- gCCCGGCA----UUUCGCCuuCaAugGCgC- -5'
23616 3' -53.9 NC_005261.1 + 83039 0.68 0.88817
Target:  5'- aGGGCCGcucgccGCGGGAGggGgcucccugcgcgcccCCGCGg -3'
miRNA:   3'- gCCCGGCauuu--CGCCUUCaaU---------------GGCGC- -5'
23616 3' -53.9 NC_005261.1 + 86490 0.67 0.938677
Target:  5'- cCGGGCCGgcGccugucugcGGCaGggGcUUGCCGUc -3'
miRNA:   3'- -GCCCGGCauU---------UCGcCuuC-AAUGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.