miRNA display CGI


Results 101 - 120 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 3' -53.9 NC_005261.1 + 88012 0.66 0.952063
Target:  5'- gCGGGCCcguUAAAGCGGccGgcggUGCCuggggGCGg -3'
miRNA:   3'- -GCCCGGc--AUUUCGCCuuCa---AUGG-----CGC- -5'
23616 3' -53.9 NC_005261.1 + 88172 0.69 0.876102
Target:  5'- cCGGGCCGgggcgacgccGGCGGcgccggcGAGgcggGCCGCGc -3'
miRNA:   3'- -GCCCGGCauu-------UCGCC-------UUCaa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 88475 0.74 0.574592
Target:  5'- gCGGGCCGUGccGCGccGGAGcgcGCCGCGc -3'
miRNA:   3'- -GCCCGGCAUuuCGC--CUUCaa-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 88872 0.66 0.959805
Target:  5'- gCGGGacagccucuCCGUu--GCGGuGGUUAgCGCGg -3'
miRNA:   3'- -GCCC---------GGCAuuuCGCCuUCAAUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 89836 0.67 0.938677
Target:  5'- uCGcGGCCG---GGcCGGAGG--GCCGCGg -3'
miRNA:   3'- -GC-CCGGCauuUC-GCCUUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 92627 0.71 0.767767
Target:  5'- cCGGGCgCG-AGAGCGGGAccGggACCGgGa -3'
miRNA:   3'- -GCCCG-GCaUUUCGCCUU--CaaUGGCgC- -5'
23616 3' -53.9 NC_005261.1 + 92804 0.66 0.94338
Target:  5'- cCGGucGCCGggcgcGCGGgcGUgggACCGCGc -3'
miRNA:   3'- -GCC--CGGCauuu-CGCCuuCAa--UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 97018 0.7 0.831092
Target:  5'- gCGGGCCGUcgGGCGcgcccgGCCGCc -3'
miRNA:   3'- -GCCCGGCAuuUCGCcuucaaUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 97114 0.75 0.554192
Target:  5'- cCGGGCCGc--GGCcGGAGgcGCCGCGg -3'
miRNA:   3'- -GCCCGGCauuUCGcCUUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 97192 0.74 0.574592
Target:  5'- cCGGGCCGc--GGcCGGAAGc-GCCGCGg -3'
miRNA:   3'- -GCCCGGCauuUC-GCCUUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 97625 0.68 0.898918
Target:  5'- gCGGGCgGagcGGGCGGAgcGGgcgcgggUGCCGCa -3'
miRNA:   3'- -GCCCGgCau-UUCGCCU--UCa------AUGGCGc -5'
23616 3' -53.9 NC_005261.1 + 97692 0.66 0.95605
Target:  5'- gGGGCUGccGGGGCGGuGGggagACgGCGg -3'
miRNA:   3'- gCCCGGCa-UUUCGCCuUCaa--UGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 97987 0.67 0.923103
Target:  5'- gGGGagaGUGAAGUGGGAG--GCgGCGg -3'
miRNA:   3'- gCCCgg-CAUUUCGCCUUCaaUGgCGC- -5'
23616 3' -53.9 NC_005261.1 + 98049 0.67 0.938677
Target:  5'- gGcGGCCGc-GGGCGGc-GggACCGCGg -3'
miRNA:   3'- gC-CCGGCauUUCGCCuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98110 0.71 0.777259
Target:  5'- gCGGGCgGcGAGGCuGggGacGCCGCGg -3'
miRNA:   3'- -GCCCGgCaUUUCGcCuuCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98142 0.69 0.863388
Target:  5'- gGcGGCCGUc-GGCGGcAAG--GCCGCGg -3'
miRNA:   3'- gC-CCGGCAuuUCGCC-UUCaaUGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98443 0.66 0.947841
Target:  5'- cCGGGCCGguAGGCGGcgc---CCGCa -3'
miRNA:   3'- -GCCCGGCauUUCGCCuucaauGGCGc -5'
23616 3' -53.9 NC_005261.1 + 98738 0.69 0.863388
Target:  5'- aCGcGGCCGc---GCGGgcGUUgGCCGCGc -3'
miRNA:   3'- -GC-CCGGCauuuCGCCuuCAA-UGGCGC- -5'
23616 3' -53.9 NC_005261.1 + 98924 0.69 0.863388
Target:  5'- gGGGUCGgcu-GCGGggGgcAgCGCGu -3'
miRNA:   3'- gCCCGGCauuuCGCCuuCaaUgGCGC- -5'
23616 3' -53.9 NC_005261.1 + 99459 0.67 0.923103
Target:  5'- gCGGGCCGacccGCGGcGGcgcugGCCGCu -3'
miRNA:   3'- -GCCCGGCauuuCGCCuUCaa---UGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.