Results 81 - 100 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 69304 | 0.72 | 0.718642 |
Target: 5'- gGGcGCCGguggcggcgGGAGCGGggGUgACgGCGa -3' miRNA: 3'- gCC-CGGCa--------UUUCGCCuuCAaUGgCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68994 | 0.69 | 0.870943 |
Target: 5'- uCGGGCCGc---GCGGGc---GCCGCGg -3' miRNA: 3'- -GCCCGGCauuuCGCCUucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68829 | 0.68 | 0.883281 |
Target: 5'- uGGGCCGU--GGCGGcccccccgucccgcGGGgacgcccucUGCCGCGg -3' miRNA: 3'- gCCCGGCAuuUCGCC--------------UUCa--------AUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68592 | 0.74 | 0.626201 |
Target: 5'- gCGGGCCGcgGGAGCGGGGccgACgGCGu -3' miRNA: 3'- -GCCCGGCa-UUUCGCCUUcaaUGgCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 68128 | 0.69 | 0.878279 |
Target: 5'- gCGGGCCGcGgcGCGGcg---ACCGCGc -3' miRNA: 3'- -GCCCGGCaUuuCGCCuucaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 65820 | 0.66 | 0.95605 |
Target: 5'- cCGGGCgGc--GGCGcGAAGcugcccgagUGCCGCGa -3' miRNA: 3'- -GCCCGgCauuUCGC-CUUCa--------AUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 63472 | 0.67 | 0.917421 |
Target: 5'- aGGGUugcaCGgcGAGCGGAAGUa--CGCa -3' miRNA: 3'- gCCCG----GCauUUCGCCUUCAaugGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 63271 | 0.66 | 0.952063 |
Target: 5'- gGGGCUGUAcacCGGcGAGgcGCCGCu -3' miRNA: 3'- gCCCGGCAUuucGCC-UUCaaUGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 62505 | 0.76 | 0.494492 |
Target: 5'- aCGGGcCCGUGuucuGCaGGAAGgcGCCGCGc -3' miRNA: 3'- -GCCC-GGCAUuu--CG-CCUUCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 62450 | 0.69 | 0.839463 |
Target: 5'- cCGGGCCccagcagcGGCGGAAGcaggcacACCGCGu -3' miRNA: 3'- -GCCCGGcauu----UCGCCUUCaa-----UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 60409 | 0.68 | 0.898918 |
Target: 5'- cCGGGCCGgcccGGGCccGggGccGCCGCGc -3' miRNA: 3'- -GCCCGGCau--UUCGc-CuuCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 60238 | 0.71 | 0.756214 |
Target: 5'- aGGGCCGccuccgccgcGGCGGGAGcggcgGCCGUGa -3' miRNA: 3'- gCCCGGCauu-------UCGCCUUCaa---UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 58693 | 0.71 | 0.767767 |
Target: 5'- cCGGGCCGUcAGGGCGcgccgcugaGAGGUgcgccACCGCc -3' miRNA: 3'- -GCCCGGCA-UUUCGC---------CUUCAa----UGGCGc -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 57395 | 0.67 | 0.923103 |
Target: 5'- uCGGGgagcgcgcCCGUGAuccGCGGccGgcGCCGCGa -3' miRNA: 3'- -GCCC--------GGCAUUu--CGCCuuCaaUGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 57186 | 0.7 | 0.804897 |
Target: 5'- gGGGUCGgcggGAAGgGGggGggggGCgCGCGg -3' miRNA: 3'- gCCCGGCa---UUUCgCCuuCaa--UG-GCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 56147 | 0.69 | 0.839463 |
Target: 5'- gCGGGCCG-AGGGUGGcGGcaGCgGCGg -3' miRNA: 3'- -GCCCGGCaUUUCGCCuUCaaUGgCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 54151 | 0.73 | 0.677915 |
Target: 5'- aCGcGGCCGUGc-GCGG-GGUUGCCGgGa -3' miRNA: 3'- -GC-CCGGCAUuuCGCCuUCAAUGGCgC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 53586 | 0.69 | 0.870197 |
Target: 5'- gCGGGCCGgcGgcgccccAGCGGAccgacgagGCCGUGg -3' miRNA: 3'- -GCCCGGCauU-------UCGCCUucaa----UGGCGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 52979 | 0.69 | 0.870943 |
Target: 5'- gCGGcGCCGgcAGGCGGggGcggcGCCcagGCGu -3' miRNA: 3'- -GCC-CGGCauUUCGCCuuCaa--UGG---CGC- -5' |
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23616 | 3' | -53.9 | NC_005261.1 | + | 51359 | 0.69 | 0.863388 |
Target: 5'- uGGGCUGUccGGCGcGGAGUacgcgcagGCCGUGc -3' miRNA: 3'- gCCCGGCAuuUCGC-CUUCAa-------UGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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