Results 41 - 60 of 160 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 22968 | 0.66 | 0.959805 |
Target: 5'- aCGaGGCCGaGGAcCGGGAGgagGCgGCGg -3' miRNA: 3'- -GC-CCGGCaUUUcGCCUUCaa-UGgCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 3431 | 0.66 | 0.963333 |
Target: 5'- gCGGGCCagcguccAGGCGGGcgcgcGGgccGCCGCGc -3' miRNA: 3'- -GCCCGGcau----UUCGCCU-----UCaa-UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 34921 | 0.66 | 0.963333 |
Target: 5'- gGGGCgCGgccacGCGGggGgcgGCCgGCGc -3' miRNA: 3'- gCCCG-GCauuu-CGCCuuCaa-UGG-CGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 102105 | 0.66 | 0.963333 |
Target: 5'- aGGGCCGac-AGCGc-AGggGCCGCc -3' miRNA: 3'- gCCCGGCauuUCGCcuUCaaUGGCGc -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 21812 | 0.66 | 0.963333 |
Target: 5'- cCGGGCCGggcccGCGGcGGgcGCgCGUGc -3' miRNA: 3'- -GCCCGGCauuu-CGCCuUCaaUG-GCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 120002 | 0.66 | 0.95605 |
Target: 5'- gGGcGCCGgcuacGCGGccGUgUGCCGCGc -3' miRNA: 3'- gCC-CGGCauuu-CGCCuuCA-AUGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 107276 | 0.66 | 0.95605 |
Target: 5'- gCGGGCgCGcaucAGGCGGcAGgcacuccGCCGCGg -3' miRNA: 3'- -GCCCG-GCau--UUCGCCuUCaa-----UGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 121436 | 0.66 | 0.94338 |
Target: 5'- gGGGCgGcGGGGCGGGcauGggGCCGuCGa -3' miRNA: 3'- gCCCGgCaUUUCGCCUu--CaaUGGC-GC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 121499 | 0.66 | 0.94338 |
Target: 5'- gGGGCgGcGGGGCGGGcauGggGCCGuCGa -3' miRNA: 3'- gCCCGgCaUUUCGCCUu--CaaUGGC-GC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 22779 | 0.66 | 0.947841 |
Target: 5'- gCGGGCCccgcGAGaaGGggGUUGUCGCGg -3' miRNA: 3'- -GCCCGGcau-UUCg-CCuuCAAUGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 28834 | 0.66 | 0.947841 |
Target: 5'- gGcGGCCGcggcUGAGGCGGccGUcgugGCCGCc -3' miRNA: 3'- gC-CCGGC----AUUUCGCCuuCAa---UGGCGc -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 98443 | 0.66 | 0.947841 |
Target: 5'- cCGGGCCGguAGGCGGcgc---CCGCa -3' miRNA: 3'- -GCCCGGCauUUCGCCuucaauGGCGc -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 35772 | 0.66 | 0.952063 |
Target: 5'- uCGGGCCG---AGacaGGAGGc--CCGCGg -3' miRNA: 3'- -GCCCGGCauuUCg--CCUUCaauGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 63271 | 0.66 | 0.952063 |
Target: 5'- gGGGCUGUAcacCGGcGAGgcGCCGCu -3' miRNA: 3'- gCCCGGCAUuucGCC-UUCaaUGGCGc -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 88012 | 0.66 | 0.952063 |
Target: 5'- gCGGGCCcguUAAAGCGGccGgcggUGCCuggggGCGg -3' miRNA: 3'- -GCCCGGc--AUUUCGCCuuCa---AUGG-----CGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 119289 | 0.66 | 0.952063 |
Target: 5'- gGGGCuCGccgagGAAGCGGAGGgcgagGCCuCGc -3' miRNA: 3'- gCCCG-GCa----UUUCGCCUUCaa---UGGcGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 29258 | 0.66 | 0.952063 |
Target: 5'- aCGGGCCGccgccGCuGGAGGgc-CCGCu -3' miRNA: 3'- -GCCCGGCauuu-CG-CCUUCaauGGCGc -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 37274 | 0.66 | 0.952063 |
Target: 5'- cCGaGCCGUGccGCGGcgaccuGUUGCuCGCGg -3' miRNA: 3'- -GCcCGGCAUuuCGCCuu----CAAUG-GCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 23716 | 0.66 | 0.95605 |
Target: 5'- uCGGG-UGgcAAGCGGGug--GCCGCGc -3' miRNA: 3'- -GCCCgGCauUUCGCCUucaaUGGCGC- -5' |
|||||||
23616 | 3' | -53.9 | NC_005261.1 | + | 97692 | 0.66 | 0.95605 |
Target: 5'- gGGGCUGccGGGGCGGuGGggagACgGCGg -3' miRNA: 3'- gCCCGGCa-UUUCGCCuUCaa--UGgCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home