Results 41 - 60 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 5' | -59.5 | NC_005261.1 | + | 51008 | 0.66 | 0.777237 |
Target: 5'- gGCGCGGCGggagCUCGgcgagCGCCacccgGCGCu -3' miRNA: 3'- gCGCGUCGUa---GAGCag---GCGGag---CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 85235 | 0.66 | 0.777237 |
Target: 5'- cCGCGcCGGCAUCUgGUUgCGCUgcaGCaGCg -3' miRNA: 3'- -GCGC-GUCGUAGAgCAG-GCGGag-CG-CG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 95709 | 0.66 | 0.777237 |
Target: 5'- gCGCGCgGGCucgcgCUCGggcCCGCC--GCGCu -3' miRNA: 3'- -GCGCG-UCGua---GAGCa--GGCGGagCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 38490 | 0.66 | 0.777237 |
Target: 5'- cCGCgGCGGCGUCgacuggagCGUCguauaaggcgcgCGCUggcugCGCGCg -3' miRNA: 3'- -GCG-CGUCGUAGa-------GCAG------------GCGGa----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 50825 | 0.66 | 0.777237 |
Target: 5'- cCGCGCGGCuuggCG-CCGCgagCUgGCGCc -3' miRNA: 3'- -GCGCGUCGuagaGCaGGCG---GAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 106201 | 0.66 | 0.768081 |
Target: 5'- gGCGCcguuuaaacaaaAGCGcCcgCGgCCGCCUgGCGCg -3' miRNA: 3'- gCGCG------------UCGUaGa-GCaGGCGGAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 103527 | 0.66 | 0.768081 |
Target: 5'- -cCGCGGCAUC-CG-CCGCCUCcuCGg -3' miRNA: 3'- gcGCGUCGUAGaGCaGGCGGAGc-GCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 78891 | 0.66 | 0.762531 |
Target: 5'- uCGCcaGCAGCGgcccgcccuuguugcUCUUcUUCGCCUUGUGCu -3' miRNA: 3'- -GCG--CGUCGU---------------AGAGcAGGCGGAGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 51548 | 0.66 | 0.762531 |
Target: 5'- aGCGCAGacaGUCgcCGcaggcauaaccgucuUCUGCCUCGcCGCc -3' miRNA: 3'- gCGCGUCg--UAGa-GC---------------AGGCGGAGC-GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 84634 | 0.66 | 0.767159 |
Target: 5'- aGCGCcuccaccAGCGUgUUGUcccggcuggcgCCGCC-CGCGCc -3' miRNA: 3'- gCGCG-------UCGUAgAGCA-----------GGCGGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 53769 | 0.66 | 0.767159 |
Target: 5'- cCGCGCGGCAaacgaccgggUCgucgccgucgccuUCGcccgCCGCCUCG-GCc -3' miRNA: 3'- -GCGCGUCGU----------AG-------------AGCa---GGCGGAGCgCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 136632 | 0.66 | 0.768081 |
Target: 5'- aGgGCGGCGggaaggcCUgGUCCGCCUgGaGCu -3' miRNA: 3'- gCgCGUCGUa------GAgCAGGCGGAgCgCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 5124 | 0.66 | 0.768081 |
Target: 5'- gGCGCgGGCggCcCGcCgGCgCUCGCGCg -3' miRNA: 3'- gCGCG-UCGuaGaGCaGgCG-GAGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 50423 | 0.66 | 0.768081 |
Target: 5'- uCGCGgAGCcgCUCGUgCaGCgUgCGCGUg -3' miRNA: 3'- -GCGCgUCGuaGAGCAgG-CGgA-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 81259 | 0.66 | 0.768081 |
Target: 5'- aGCGCgAGU-UCUCcccggCCGCCU-GCGCg -3' miRNA: 3'- gCGCG-UCGuAGAGca---GGCGGAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 118076 | 0.66 | 0.768081 |
Target: 5'- gGcCGCAGCcgcgCUCGUCUGCUg-GCGg -3' miRNA: 3'- gC-GCGUCGua--GAGCAGGCGGagCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 121811 | 0.66 | 0.768081 |
Target: 5'- gCGCGUGGCugggcUCUgCGggCCGCCgcggCgGCGCa -3' miRNA: 3'- -GCGCGUCGu----AGA-GCa-GGCGGa---G-CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 4364 | 0.66 | 0.768081 |
Target: 5'- uCGCG-AGUGUCgcccgCG-CCGCCgaaGCGCa -3' miRNA: 3'- -GCGCgUCGUAGa----GCaGGCGGag-CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 29975 | 0.66 | 0.768081 |
Target: 5'- gGCGCGGUg---CG-CCGCCggCGCGUc -3' miRNA: 3'- gCGCGUCGuagaGCaGGCGGa-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 59520 | 0.66 | 0.768081 |
Target: 5'- gCGCGCccuggAGCAgcccCG-CCGCCaccgCGCGCg -3' miRNA: 3'- -GCGCG-----UCGUaga-GCaGGCGGa---GCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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