Results 41 - 60 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 5' | -59.5 | NC_005261.1 | + | 64920 | 0.73 | 0.348656 |
Target: 5'- aGCGCGGCGUgcuccugCUCG-CCGCCcaggggCGCGUg -3' miRNA: 3'- gCGCGUCGUA-------GAGCaGGCGGa-----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 104587 | 0.73 | 0.349416 |
Target: 5'- uGCGCGcGCAUCgCcUCCGCCagcCGCGCg -3' miRNA: 3'- gCGCGU-CGUAGaGcAGGCGGa--GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 76021 | 0.73 | 0.35708 |
Target: 5'- cCGCGCAGCGcCgCGggCGCCcCGCGCg -3' miRNA: 3'- -GCGCGUCGUaGaGCagGCGGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 112479 | 0.73 | 0.36486 |
Target: 5'- uGCGCGGCAUgCUCGcCCGCgacgagucaaCGCGCu -3' miRNA: 3'- gCGCGUCGUA-GAGCaGGCGga--------GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 95560 | 0.73 | 0.372758 |
Target: 5'- gCGUGCAGC-UCUCGuUCCGCUUCauGgGCc -3' miRNA: 3'- -GCGCGUCGuAGAGC-AGGCGGAG--CgCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 108157 | 0.73 | 0.35708 |
Target: 5'- cCGCcuGCAGCg---CGUCCGCCagggCGCGCg -3' miRNA: 3'- -GCG--CGUCGuagaGCAGGCGGa---GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 71858 | 0.73 | 0.35708 |
Target: 5'- gGCGCucgcGCcgCUUgcgGUCCGCC-CGCGCg -3' miRNA: 3'- gCGCGu---CGuaGAG---CAGGCGGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 35017 | 0.72 | 0.405488 |
Target: 5'- uGCGgcCGGCGUCUCGgUCGCUggCGCGCc -3' miRNA: 3'- gCGC--GUCGUAGAGCaGGCGGa-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 101048 | 0.72 | 0.397137 |
Target: 5'- gCGCGUAGUG-CUCGUCCGCg-CGCaGCc -3' miRNA: 3'- -GCGCGUCGUaGAGCAGGCGgaGCG-CG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 72938 | 0.72 | 0.422518 |
Target: 5'- uCGCGCAGCGcCggcgcCGgcaCCGgCUCGCGCc -3' miRNA: 3'- -GCGCGUCGUaGa----GCa--GGCgGAGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 106987 | 0.72 | 0.397137 |
Target: 5'- cCGCGCAccGCGUCggccagGUCCGCCgaGCGCc -3' miRNA: 3'- -GCGCGU--CGUAGag----CAGGCGGagCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 107630 | 0.72 | 0.397137 |
Target: 5'- uGCGCGGgAaCUCGagCGCC-CGCGCu -3' miRNA: 3'- gCGCGUCgUaGAGCagGCGGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 63053 | 0.72 | 0.405488 |
Target: 5'- uCGCGCAGCAg--CG-CCGCgUCGCugGCg -3' miRNA: 3'- -GCGCGUCGUagaGCaGGCGgAGCG--CG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 90901 | 0.72 | 0.431192 |
Target: 5'- gGCGCGGCAggUCUCGgcggcgcucuUCCGCC-CGCcCa -3' miRNA: 3'- gCGCGUCGU--AGAGC----------AGGCGGaGCGcG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 3552 | 0.72 | 0.431192 |
Target: 5'- aGCGCGGCGggcgCGgcgCCGCUaaggCGCGCg -3' miRNA: 3'- gCGCGUCGUaga-GCa--GGCGGa---GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 108747 | 0.72 | 0.431192 |
Target: 5'- gGCGCcGCGg--CGUCCGCggCGCGCc -3' miRNA: 3'- gCGCGuCGUagaGCAGGCGgaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 134075 | 0.72 | 0.403809 |
Target: 5'- uCGCGCGGCucaugugcgagcUCUCGgCgCGCCggCGCGCg -3' miRNA: 3'- -GCGCGUCGu-----------AGAGCaG-GCGGa-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 72709 | 0.72 | 0.413949 |
Target: 5'- cCGC-CAGCGUCgCGcCCGCCgccccgucCGCGCg -3' miRNA: 3'- -GCGcGUCGUAGaGCaGGCGGa-------GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 17004 | 0.72 | 0.431192 |
Target: 5'- aGCGcCAGCAUgUCGcacgcggCCGCgCUCGuCGCg -3' miRNA: 3'- gCGC-GUCGUAgAGCa------GGCG-GAGC-GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 100221 | 0.72 | 0.422518 |
Target: 5'- cCGCGUAGag-CUCGgccaCCGCCggGCGCa -3' miRNA: 3'- -GCGCGUCguaGAGCa---GGCGGagCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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