miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 124007 0.72 0.388897
Target:  5'- gCGCGUAGCG-CUCGUuuGCCguguagcCGgGCg -3'
miRNA:   3'- -GCGCGUCGUaGAGCAggCGGa------GCgCG- -5'
23616 5' -59.5 NC_005261.1 + 17004 0.72 0.431192
Target:  5'- aGCGcCAGCAUgUCGcacgcggCCGCgCUCGuCGCg -3'
miRNA:   3'- gCGC-GUCGUAgAGCa------GGCG-GAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 134075 0.72 0.403809
Target:  5'- uCGCGCGGCucaugugcgagcUCUCGgCgCGCCggCGCGCg -3'
miRNA:   3'- -GCGCGUCGu-----------AGAGCaG-GCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106987 0.72 0.397137
Target:  5'- cCGCGCAccGCGUCggccagGUCCGCCgaGCGCc -3'
miRNA:   3'- -GCGCGU--CGUAGag----CAGGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108747 0.72 0.431192
Target:  5'- gGCGCcGCGg--CGUCCGCggCGCGCc -3'
miRNA:   3'- gCGCGuCGUagaGCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 63053 0.72 0.405488
Target:  5'- uCGCGCAGCAg--CG-CCGCgUCGCugGCg -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGgAGCG--CG- -5'
23616 5' -59.5 NC_005261.1 + 1600 0.72 0.397137
Target:  5'- gGCGCGGUggCUgG-CCGCCUCGCc- -3'
miRNA:   3'- gCGCGUCGuaGAgCaGGCGGAGCGcg -5'
23616 5' -59.5 NC_005261.1 + 123838 0.71 0.448848
Target:  5'- uCGUGCAGCGUCgCG-CUGCCUaGCGg -3'
miRNA:   3'- -GCGCGUCGUAGaGCaGGCGGAgCGCg -5'
23616 5' -59.5 NC_005261.1 + 104182 0.71 0.476061
Target:  5'- gCGCGCGGguCGUCgggcgggacggCGUCCagGCgCUCGCGCg -3'
miRNA:   3'- -GCGCGUC--GUAGa----------GCAGG--CG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108522 0.71 0.485313
Target:  5'- cCGCGCacgaaGGgGUCUCGguaggccagcgCCGCCgacaCGCGCa -3'
miRNA:   3'- -GCGCG-----UCgUAGAGCa----------GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 86905 0.71 0.466897
Target:  5'- gCGCGCGGCgcggacccgcGUCcacCG-CCGCCgccgCGCGCg -3'
miRNA:   3'- -GCGCGUCG----------UAGa--GCaGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104869 0.71 0.484384
Target:  5'- aCGCGUcgaugucAGCGUCgaUCG-CCGCCgCGUGCg -3'
miRNA:   3'- -GCGCG-------UCGUAG--AGCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 100980 0.71 0.476061
Target:  5'- gGCGCccagcGCGUCgccgCGcUCCGCCagcCGCGCg -3'
miRNA:   3'- gCGCGu----CGUAGa---GC-AGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105309 0.71 0.485313
Target:  5'- aGCGCGGgGUcCUCGcacUCCGCCcCgGCGCc -3'
miRNA:   3'- gCGCGUCgUA-GAGC---AGGCGGaG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 125323 0.71 0.448848
Target:  5'- -cCGCGGCcUCggCGUCCGCagCGCGCa -3'
miRNA:   3'- gcGCGUCGuAGa-GCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 45415 0.71 0.466897
Target:  5'- uGCuGCGGCGcCUgCGcCCGCCgcccgCGCGCa -3'
miRNA:   3'- gCG-CGUCGUaGA-GCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104329 0.71 0.448848
Target:  5'- aCGCGC-GCGUCcagCGgCCgGCCgUCGCGCa -3'
miRNA:   3'- -GCGCGuCGUAGa--GCaGG-CGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 44022 0.71 0.485313
Target:  5'- gGCGCGGCGgg-CGgCCGCCgCGCGg -3'
miRNA:   3'- gCGCGUCGUagaGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 42614 0.71 0.489038
Target:  5'- uCGCGCGGCgcaaaguccagcgggGaCUCGgCCGCCgcggcCGCGCg -3'
miRNA:   3'- -GCGCGUCG---------------UaGAGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 53998 0.71 0.466897
Target:  5'- gCGCGCGGCGcacaggCG-CCGCCgcgagcgcuUCGCGCa -3'
miRNA:   3'- -GCGCGUCGUaga---GCaGGCGG---------AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.