miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 30267 0.71 0.43997
Target:  5'- gGCGCGGCGgccCgcgCGcCCGCCUggacgcuggccCGCGCg -3'
miRNA:   3'- gCGCGUCGUa--Ga--GCaGGCGGA-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 93770 0.71 0.443509
Target:  5'- gCGCGCGGCGUCgcagcaggugccccCGggacgccgcgCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCGUCGUAGa-------------GCa---------GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104182 0.71 0.476061
Target:  5'- gCGCGCGGguCGUCgggcgggacggCGUCCagGCgCUCGCGCg -3'
miRNA:   3'- -GCGCGUC--GUAGa----------GCAGG--CG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 125323 0.71 0.448848
Target:  5'- -cCGCGGCcUCggCGUCCGCagCGCGCa -3'
miRNA:   3'- gcGCGUCGuAGa-GCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 11945 0.71 0.457825
Target:  5'- gCGcCGCGGCggCUCGcCCGgCgCGCGCu -3'
miRNA:   3'- -GC-GCGUCGuaGAGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104869 0.71 0.484384
Target:  5'- aCGCGUcgaugucAGCGUCgaUCG-CCGCCgCGUGCg -3'
miRNA:   3'- -GCGCG-------UCGUAG--AGCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105309 0.71 0.485313
Target:  5'- aGCGCGGgGUcCUCGcacUCCGCCcCgGCGCc -3'
miRNA:   3'- gCGCGUCgUA-GAGC---AGGCGGaG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 101150 0.7 0.54636
Target:  5'- cCGCGCGGCGgcgCG-CCGCCgcgaagagcucccaCGCGCc -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGGa-------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 122338 0.7 0.542464
Target:  5'- gGCGCucGCAgagCUCGccuggcggCCGCggCUCGCGCg -3'
miRNA:   3'- gCGCGu-CGUa--GAGCa-------GGCG--GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 82582 0.7 0.542464
Target:  5'- uCGCGCAGCGcgucCUCGUUgCGCUgguccgggCGCGUg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCAG-GCGGa-------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 28583 0.7 0.532766
Target:  5'- gCGCGCgAGCGcCggCGggCCGCC-CGCGCc -3'
miRNA:   3'- -GCGCG-UCGUaGa-GCa-GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 66446 0.7 0.530834
Target:  5'- aGCGCGGCGcg-CG-CCGCCggucccgccaggCGCGCg -3'
miRNA:   3'- gCGCGUCGUagaGCaGGCGGa-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 91170 0.7 0.523131
Target:  5'- cCGgGCGGCAgCUCccgCCggGCUUCGCGCg -3'
miRNA:   3'- -GCgCGUCGUaGAGca-GG--CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 54420 0.7 0.504069
Target:  5'- uCGaGgAGCAUCUCcgagggCCGCgUCGCGCa -3'
miRNA:   3'- -GCgCgUCGUAGAGca----GGCGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 91452 0.7 0.494651
Target:  5'- uGCGCGGCA---CGgccCCGCC-CGCGCc -3'
miRNA:   3'- gCGCGUCGUagaGCa--GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 126776 0.7 0.504069
Target:  5'- gGCGCccacuaccGCGUCUgCGUCUGCCgagagcaGCGCg -3'
miRNA:   3'- gCGCGu-------CGUAGA-GCAGGCGGag-----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 108262 0.7 0.494651
Target:  5'- cCGCGgcCAGCGUCUCcacggccugGUCCgGCgUUGCGCu -3'
miRNA:   3'- -GCGC--GUCGUAGAG---------CAGG-CGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 49107 0.7 0.494651
Target:  5'- gCGCGCAGCAgcucCUCGagCGCggCGgGCg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCagGCGgaGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 103227 0.7 0.494651
Target:  5'- aGCGCGcGCAg-UCcUCCGCCgucCGCGCg -3'
miRNA:   3'- gCGCGU-CGUagAGcAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 91080 0.7 0.504069
Target:  5'- aCGCGCGGCGccuggucgacgugCUCaugcacgacgacgCCGUCUCGCGCg -3'
miRNA:   3'- -GCGCGUCGUa------------GAGca-----------GGCGGAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.