miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 64920 0.73 0.348656
Target:  5'- aGCGCGGCGUgcuccugCUCG-CCGCCcaggggCGCGUg -3'
miRNA:   3'- gCGCGUCGUA-------GAGCaGGCGGa-----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104587 0.73 0.349416
Target:  5'- uGCGCGcGCAUCgCcUCCGCCagcCGCGCg -3'
miRNA:   3'- gCGCGU-CGUAGaGcAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108157 0.73 0.35708
Target:  5'- cCGCcuGCAGCg---CGUCCGCCagggCGCGCg -3'
miRNA:   3'- -GCG--CGUCGuagaGCAGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 71858 0.73 0.35708
Target:  5'- gGCGCucgcGCcgCUUgcgGUCCGCC-CGCGCg -3'
miRNA:   3'- gCGCGu---CGuaGAG---CAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 76021 0.73 0.35708
Target:  5'- cCGCGCAGCGcCgCGggCGCCcCGCGCg -3'
miRNA:   3'- -GCGCGUCGUaGaGCagGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 112479 0.73 0.36486
Target:  5'- uGCGCGGCAUgCUCGcCCGCgacgagucaaCGCGCu -3'
miRNA:   3'- gCGCGUCGUA-GAGCaGGCGga--------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 95560 0.73 0.372758
Target:  5'- gCGUGCAGC-UCUCGuUCCGCUUCauGgGCc -3'
miRNA:   3'- -GCGCGUCGuAGAGC-AGGCGGAG--CgCG- -5'
23616 5' -59.5 NC_005261.1 + 64131 0.72 0.388079
Target:  5'- cCGCGCGGCcgCcagcgCGUCCuggcccaGCC-CGCGCa -3'
miRNA:   3'- -GCGCGUCGuaGa----GCAGG-------CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124007 0.72 0.388897
Target:  5'- gCGCGUAGCG-CUCGUuuGCCguguagcCGgGCg -3'
miRNA:   3'- -GCGCGUCGUaGAGCAggCGGa------GCgCG- -5'
23616 5' -59.5 NC_005261.1 + 126530 0.72 0.388897
Target:  5'- cCGCGCccgccGCGcCUCGgccacgcgCCGCCgUCGCGCg -3'
miRNA:   3'- -GCGCGu----CGUaGAGCa-------GGCGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 59268 0.72 0.388897
Target:  5'- aCGCGUcgcacGGCGUgUCG-CCGCCcagcagCGCGCa -3'
miRNA:   3'- -GCGCG-----UCGUAgAGCaGGCGGa-----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 107630 0.72 0.397137
Target:  5'- uGCGCGGgAaCUCGagCGCC-CGCGCu -3'
miRNA:   3'- gCGCGUCgUaGAGCagGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101048 0.72 0.397137
Target:  5'- gCGCGUAGUG-CUCGUCCGCg-CGCaGCc -3'
miRNA:   3'- -GCGCGUCGUaGAGCAGGCGgaGCG-CG- -5'
23616 5' -59.5 NC_005261.1 + 1600 0.72 0.397137
Target:  5'- gGCGCGGUggCUgG-CCGCCUCGCc- -3'
miRNA:   3'- gCGCGUCGuaGAgCaGGCGGAGCGcg -5'
23616 5' -59.5 NC_005261.1 + 106987 0.72 0.397137
Target:  5'- cCGCGCAccGCGUCggccagGUCCGCCgaGCGCc -3'
miRNA:   3'- -GCGCGU--CGUAGag----CAGGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 134075 0.72 0.403809
Target:  5'- uCGCGCGGCucaugugcgagcUCUCGgCgCGCCggCGCGCg -3'
miRNA:   3'- -GCGCGUCGu-----------AGAGCaG-GCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 63053 0.72 0.405488
Target:  5'- uCGCGCAGCAg--CG-CCGCgUCGCugGCg -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGgAGCG--CG- -5'
23616 5' -59.5 NC_005261.1 + 35017 0.72 0.405488
Target:  5'- uGCGgcCGGCGUCUCGgUCGCUggCGCGCc -3'
miRNA:   3'- gCGC--GUCGUAGAGCaGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 72709 0.72 0.413949
Target:  5'- cCGC-CAGCGUCgCGcCCGCCgccccgucCGCGCg -3'
miRNA:   3'- -GCGcGUCGUAGaGCaGGCGGa-------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 118108 0.72 0.422518
Target:  5'- cCGCGCAGacgCUgCG-CCGCCggcUCGCGCc -3'
miRNA:   3'- -GCGCGUCguaGA-GCaGGCGG---AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.