miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 72938 0.72 0.422518
Target:  5'- uCGCGCAGCGcCggcgcCGgcaCCGgCUCGCGCc -3'
miRNA:   3'- -GCGCGUCGUaGa----GCa--GGCgGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 100221 0.72 0.422518
Target:  5'- cCGCGUAGag-CUCGgccaCCGCCggGCGCa -3'
miRNA:   3'- -GCGCGUCguaGAGCa---GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 118108 0.72 0.422518
Target:  5'- cCGCGCAGacgCUgCG-CCGCCggcUCGCGCc -3'
miRNA:   3'- -GCGCGUCguaGA-GCaGGCGG---AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 90901 0.72 0.431192
Target:  5'- gGCGCGGCAggUCUCGgcggcgcucuUCCGCC-CGCcCa -3'
miRNA:   3'- gCGCGUCGU--AGAGC----------AGGCGGaGCGcG- -5'
23616 5' -59.5 NC_005261.1 + 3552 0.72 0.431192
Target:  5'- aGCGCGGCGggcgCGgcgCCGCUaaggCGCGCg -3'
miRNA:   3'- gCGCGUCGUaga-GCa--GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 17004 0.72 0.431192
Target:  5'- aGCGcCAGCAUgUCGcacgcggCCGCgCUCGuCGCg -3'
miRNA:   3'- gCGC-GUCGUAgAGCa------GGCG-GAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 108747 0.72 0.431192
Target:  5'- gGCGCcGCGg--CGUCCGCggCGCGCc -3'
miRNA:   3'- gCGCGuCGUagaGCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15745 0.71 0.43997
Target:  5'- cCGCGC-GCAggcCGaCCGCCUCGcCGCg -3'
miRNA:   3'- -GCGCGuCGUagaGCaGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 30267 0.71 0.43997
Target:  5'- gGCGCGGCGgccCgcgCGcCCGCCUggacgcuggccCGCGCg -3'
miRNA:   3'- gCGCGUCGUa--Ga--GCaGGCGGA-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 31309 0.71 0.43997
Target:  5'- cCGCGCggggcccgcgGGCGcgCUCG-CCGCCagCGCGCc -3'
miRNA:   3'- -GCGCG----------UCGUa-GAGCaGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 93770 0.71 0.443509
Target:  5'- gCGCGCGGCGUCgcagcaggugccccCGggacgccgcgCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCGUCGUAGa-------------GCa---------GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15892 0.71 0.448848
Target:  5'- aCGCGCGGgcgcuuUAUCUC--CCGCCcCGCGCa -3'
miRNA:   3'- -GCGCGUC------GUAGAGcaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104329 0.71 0.448848
Target:  5'- aCGCGC-GCGUCcagCGgCCgGCCgUCGCGCa -3'
miRNA:   3'- -GCGCGuCGUAGa--GCaGG-CGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 73614 0.71 0.448848
Target:  5'- gCGCGCGGCccGUCgUCGUCUuccccaGCCcgUGCGCg -3'
miRNA:   3'- -GCGCGUCG--UAG-AGCAGG------CGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 125323 0.71 0.448848
Target:  5'- -cCGCGGCcUCggCGUCCGCagCGCGCa -3'
miRNA:   3'- gcGCGUCGuAGa-GCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 123838 0.71 0.448848
Target:  5'- uCGUGCAGCGUCgCG-CUGCCUaGCGg -3'
miRNA:   3'- -GCGCGUCGUAGaGCaGGCGGAgCGCg -5'
23616 5' -59.5 NC_005261.1 + 11945 0.71 0.457825
Target:  5'- gCGcCGCGGCggCUCGcCCGgCgCGCGCu -3'
miRNA:   3'- -GC-GCGUCGuaGAGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 45415 0.71 0.466897
Target:  5'- uGCuGCGGCGcCUgCGcCCGCCgcccgCGCGCa -3'
miRNA:   3'- gCG-CGUCGUaGA-GCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 86905 0.71 0.466897
Target:  5'- gCGCGCGGCgcggacccgcGUCcacCG-CCGCCgccgCGCGCg -3'
miRNA:   3'- -GCGCGUCG----------UAGa--GCaGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 53998 0.71 0.466897
Target:  5'- gCGCGCGGCGcacaggCG-CCGCCgcgagcgcuUCGCGCa -3'
miRNA:   3'- -GCGCGUCGUaga---GCaGGCGG---------AGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.