miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 100980 0.71 0.476061
Target:  5'- gGCGCccagcGCGUCgccgCGcUCCGCCagcCGCGCg -3'
miRNA:   3'- gCGCGu----CGUAGa---GC-AGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104182 0.71 0.476061
Target:  5'- gCGCGCGGguCGUCgggcgggacggCGUCCagGCgCUCGCGCg -3'
miRNA:   3'- -GCGCGUC--GUAGa----------GCAGG--CG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104869 0.71 0.484384
Target:  5'- aCGCGUcgaugucAGCGUCgaUCG-CCGCCgCGUGCg -3'
miRNA:   3'- -GCGCG-------UCGUAG--AGCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105309 0.71 0.485313
Target:  5'- aGCGCGGgGUcCUCGcacUCCGCCcCgGCGCc -3'
miRNA:   3'- gCGCGUCgUA-GAGC---AGGCGGaG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 44022 0.71 0.485313
Target:  5'- gGCGCGGCGgg-CGgCCGCCgCGCGg -3'
miRNA:   3'- gCGCGUCGUagaGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 108522 0.71 0.485313
Target:  5'- cCGCGCacgaaGGgGUCUCGguaggccagcgCCGCCgacaCGCGCa -3'
miRNA:   3'- -GCGCG-----UCgUAGAGCa----------GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 42614 0.71 0.489038
Target:  5'- uCGCGCGGCgcaaaguccagcgggGaCUCGgCCGCCgcggcCGCGCg -3'
miRNA:   3'- -GCGCGUCG---------------UaGAGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 49107 0.7 0.494651
Target:  5'- gCGCGCAGCAgcucCUCGagCGCggCGgGCg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCagGCGgaGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 91452 0.7 0.494651
Target:  5'- uGCGCGGCA---CGgccCCGCC-CGCGCc -3'
miRNA:   3'- gCGCGUCGUagaGCa--GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108262 0.7 0.494651
Target:  5'- cCGCGgcCAGCGUCUCcacggccugGUCCgGCgUUGCGCu -3'
miRNA:   3'- -GCGC--GUCGUAGAG---------CAGG-CGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103227 0.7 0.494651
Target:  5'- aGCGCGcGCAg-UCcUCCGCCgucCGCGCg -3'
miRNA:   3'- gCGCGU-CGUagAGcAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 46562 0.7 0.504069
Target:  5'- aGCGCgAGCGcugCUgCGagcgCgGCCUCGCGCg -3'
miRNA:   3'- gCGCG-UCGUa--GA-GCa---GgCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 2420 0.7 0.504069
Target:  5'- cCGCGCGGCGgcgggccgcgaUCUCGgccagCGCCUCGgGg -3'
miRNA:   3'- -GCGCGUCGU-----------AGAGCag---GCGGAGCgCg -5'
23616 5' -59.5 NC_005261.1 + 126776 0.7 0.504069
Target:  5'- gGCGCccacuaccGCGUCUgCGUCUGCCgagagcaGCGCg -3'
miRNA:   3'- gCGCGu-------CGUAGA-GCAGGCGGag-----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 54420 0.7 0.504069
Target:  5'- uCGaGgAGCAUCUCcgagggCCGCgUCGCGCa -3'
miRNA:   3'- -GCgCgUCGUAGAGca----GGCGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 64415 0.7 0.504069
Target:  5'- gCGCGuCGGCGUCca--CCGCCaCGCGCg -3'
miRNA:   3'- -GCGC-GUCGUAGagcaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 87377 0.7 0.504069
Target:  5'- cCGCGCGGCAgaugucCUCGgccgUCGUCUCgacgGCGCc -3'
miRNA:   3'- -GCGCGUCGUa-----GAGCa---GGCGGAG----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 91080 0.7 0.504069
Target:  5'- aCGCGCGGCGccuggucgacgugCUCaugcacgacgacgCCGUCUCGCGCg -3'
miRNA:   3'- -GCGCGUCGUa------------GAGca-----------GGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 62218 0.7 0.504069
Target:  5'- gCGCGCGGCcg--CGUCUGCgccCUCGCGg -3'
miRNA:   3'- -GCGCGUCGuagaGCAGGCG---GAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 102429 0.7 0.504069
Target:  5'- uGCGCGGCcgccucCUCGgcgcgCCGCCcggccucggCGCGCa -3'
miRNA:   3'- gCGCGUCGua----GAGCa----GGCGGa--------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.