miRNA display CGI


Results 101 - 120 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 99818 0.7 0.512611
Target:  5'- aGCGCGcCGUCcgccgggUCGUCCGCCcCGcCGCc -3'
miRNA:   3'- gCGCGUcGUAG-------AGCAGGCGGaGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 84412 0.7 0.513564
Target:  5'- uCGCGCAGCAUgUCGgCCGCgccCUCcgGCGa -3'
miRNA:   3'- -GCGCGUCGUAgAGCaGGCG---GAG--CGCg -5'
23616 5' -59.5 NC_005261.1 + 132449 0.7 0.513564
Target:  5'- aGCGCGuGCccCUCGgCCGCCcucCGCGCc -3'
miRNA:   3'- gCGCGU-CGuaGAGCaGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 67304 0.7 0.513564
Target:  5'- gCGCGCGcGCcgC-CGUCgGCCgccgcCGCGCu -3'
miRNA:   3'- -GCGCGU-CGuaGaGCAGgCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102968 0.7 0.513564
Target:  5'- gGCGCcGCGggCUcCG-CCGCCgCGCGCg -3'
miRNA:   3'- gCGCGuCGUa-GA-GCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 91170 0.7 0.523131
Target:  5'- cCGgGCGGCAgCUCccgCCggGCUUCGCGCg -3'
miRNA:   3'- -GCgCGUCGUaGAGca-GG--CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 30335 0.7 0.523131
Target:  5'- gGCGCGGCugg-CGgCCGCgCUCGCGg -3'
miRNA:   3'- gCGCGUCGuagaGCaGGCG-GAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 66446 0.7 0.530834
Target:  5'- aGCGCGGCGcg-CG-CCGCCggucccgccaggCGCGCg -3'
miRNA:   3'- gCGCGUCGUagaGCaGGCGGa-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 28583 0.7 0.532766
Target:  5'- gCGCGCgAGCGcCggCGggCCGCC-CGCGCc -3'
miRNA:   3'- -GCGCG-UCGUaGa-GCa-GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 122338 0.7 0.542464
Target:  5'- gGCGCucGCAgagCUCGccuggcggCCGCggCUCGCGCg -3'
miRNA:   3'- gCGCGu-CGUa--GAGCa-------GGCG--GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 82582 0.7 0.542464
Target:  5'- uCGCGCAGCGcgucCUCGUUgCGCUgguccgggCGCGUg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCAG-GCGGa-------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101150 0.7 0.54636
Target:  5'- cCGCGCGGCGgcgCG-CCGCCgcgaagagcucccaCGCGCc -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGGa-------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 49233 0.69 0.548311
Target:  5'- aGCGCGcGCAggUCGgccgCCGCCgcggcggcgucggCGCGCa -3'
miRNA:   3'- gCGCGU-CGUagAGCa---GGCGGa------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 50520 0.69 0.550264
Target:  5'- aGCGCAGCAgggCcgUCGUCuUGCCcgagcccaucggCGCGCg -3'
miRNA:   3'- gCGCGUCGUa--G--AGCAG-GCGGa-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133145 0.69 0.55222
Target:  5'- uGCGguGCGcgCUCG-CCGCCgUCgGCGUc -3'
miRNA:   3'- gCGCguCGUa-GAGCaGGCGG-AG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 88768 0.69 0.55222
Target:  5'- gGCGCuGCGcucCUCGgcccuggCCGCCggcgcCGCGCa -3'
miRNA:   3'- gCGCGuCGUa--GAGCa------GGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 109206 0.69 0.55222
Target:  5'- uGCGCAgGCG-CUCGUaggcgcggcaCGCCgCGCGCu -3'
miRNA:   3'- gCGCGU-CGUaGAGCAg---------GCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 64682 0.69 0.55222
Target:  5'- gGUGCGGCAccgggcgcgUCcCGgggCCGCCgcCGCGCa -3'
miRNA:   3'- gCGCGUCGU---------AGaGCa--GGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 81429 0.69 0.55222
Target:  5'- --gGCGGCGUCgUCGgCCGCCcCGCGg -3'
miRNA:   3'- gcgCGUCGUAG-AGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 106590 0.69 0.560062
Target:  5'- cCGCGCGGCGcuccuccuggacCUCGUCCcagacGCCgcggagcCGCGCg -3'
miRNA:   3'- -GCGCGUCGUa-----------GAGCAGG-----CGGa------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.