miRNA display CGI


Results 121 - 140 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 102330 0.69 0.562027
Target:  5'- gCGCGCAGCcgcgccagCUCGgCCGCgUCGaagGCg -3'
miRNA:   3'- -GCGCGUCGua------GAGCaGGCGgAGCg--CG- -5'
23616 5' -59.5 NC_005261.1 + 102803 0.69 0.562027
Target:  5'- aGCGCGGCGcccaG-CCGCCgCGCGCc -3'
miRNA:   3'- gCGCGUCGUagagCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103584 0.69 0.562027
Target:  5'- cCGCGCcGUcgCUCG-CCGCCguggcCGCGg -3'
miRNA:   3'- -GCGCGuCGuaGAGCaGGCGGa----GCGCg -5'
23616 5' -59.5 NC_005261.1 + 103128 0.69 0.562027
Target:  5'- gCGCGCccGGguUCUCcagCGCCUCGCGg -3'
miRNA:   3'- -GCGCG--UCguAGAGcagGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 70099 0.69 0.562027
Target:  5'- aCGC-CGGCGagaagCUCGg-CGCCUCGUGCc -3'
miRNA:   3'- -GCGcGUCGUa----GAGCagGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 38286 0.69 0.562027
Target:  5'- gGUGCAcGCGgugCUgGcCCGCCUgagCGCGCa -3'
miRNA:   3'- gCGCGU-CGUa--GAgCaGGCGGA---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 92596 0.69 0.562027
Target:  5'- aGCGCAGCcgCUCG-CgGCg-CGUGCc -3'
miRNA:   3'- gCGCGUCGuaGAGCaGgCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 82672 0.69 0.562027
Target:  5'- aGCGCcucgAGCcgCUCGUCgggCGCCaccgcCGCGCu -3'
miRNA:   3'- gCGCG----UCGuaGAGCAG---GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 86706 0.69 0.570895
Target:  5'- aCGCGCccagcGCGUCcagcuucgccgccUCGUCCGCCgCGCccuGCa -3'
miRNA:   3'- -GCGCGu----CGUAG-------------AGCAGGCGGaGCG---CG- -5'
23616 5' -59.5 NC_005261.1 + 106945 0.69 0.571882
Target:  5'- aCGCGCAc---CUCGgcccgggcgcgcUCCGCCUCgGCGCg -3'
miRNA:   3'- -GCGCGUcguaGAGC------------AGGCGGAG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 45065 0.69 0.580786
Target:  5'- gGCGgGGCcgcccacuuucacGUCgUCGUCCGUCaCGCGCc -3'
miRNA:   3'- gCGCgUCG-------------UAG-AGCAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 94337 0.69 0.581777
Target:  5'- uCGCGCcgguaGGCGUCgaUCGUCCGgCacacaGCGCa -3'
miRNA:   3'- -GCGCG-----UCGUAG--AGCAGGCgGag---CGCG- -5'
23616 5' -59.5 NC_005261.1 + 128838 0.69 0.581777
Target:  5'- uCGCGCGGCuggCcgccaCGgugccCCGCCUCGuCGCu -3'
miRNA:   3'- -GCGCGUCGua-Ga----GCa----GGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 96289 0.69 0.581777
Target:  5'- gGCGCGGCuUCggCcUCgGCCgCGCGCa -3'
miRNA:   3'- gCGCGUCGuAGa-GcAGgCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15171 0.69 0.581777
Target:  5'- gGCGUAGCGgcggCggcgcccgCGggaaacgCCGCCaUCGCGCg -3'
miRNA:   3'- gCGCGUCGUa---Ga-------GCa------GGCGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 116496 0.69 0.581777
Target:  5'- gCGCGCGGUAUaaagagCG-CCGCCgcggCgGCGCg -3'
miRNA:   3'- -GCGCGUCGUAga----GCaGGCGGa---G-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 80827 0.69 0.581777
Target:  5'- aGCGCcGUGUaccCUCGUCCGUCgugugccagcCGCGCa -3'
miRNA:   3'- gCGCGuCGUA---GAGCAGGCGGa---------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 64041 0.69 0.581777
Target:  5'- gGCGCGGC-UCUgCG-CCGCgUgGUGCg -3'
miRNA:   3'- gCGCGUCGuAGA-GCaGGCGgAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 60188 0.69 0.581777
Target:  5'- gCGcCGCGGCGgagaaGUCCGCg-CGCGCg -3'
miRNA:   3'- -GC-GCGUCGUagag-CAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 76990 0.69 0.581777
Target:  5'- cCGC-CGGC-UCUCG-CCGCg-CGCGCg -3'
miRNA:   3'- -GCGcGUCGuAGAGCaGGCGgaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.