miRNA display CGI


Results 61 - 80 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 31057 0.66 0.739952
Target:  5'- aGCGCGGCGggagccgccgCU-GcCCGCC-CGCGUg -3'
miRNA:   3'- gCGCGUCGUa---------GAgCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 32074 0.66 0.739952
Target:  5'- aGCGCGGCGcuggggCUCGgggagCCGgaCUUCGCGg -3'
miRNA:   3'- gCGCGUCGUa-----GAGCa----GGC--GGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 101527 0.66 0.739952
Target:  5'- uCGuCGCGGUcgCgCG-CCGCCUCGgcCGCc -3'
miRNA:   3'- -GC-GCGUCGuaGaGCaGGCGGAGC--GCG- -5'
23616 5' -59.5 NC_005261.1 + 102489 0.66 0.739952
Target:  5'- gCGCGCcGCcgCgccagCGcCUggGCCUUGCGCa -3'
miRNA:   3'- -GCGCGuCGuaGa----GCaGG--CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 109331 0.66 0.739952
Target:  5'- aGCGCGGCcgCggggUCGgcggCCGCgUCGcCGUc -3'
miRNA:   3'- gCGCGUCGuaG----AGCa---GGCGgAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 110869 0.66 0.739952
Target:  5'- cCGCGCGGCcuaccgCUgccCCGUCUCGCGg -3'
miRNA:   3'- -GCGCGUCGua----GAgcaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 120442 0.66 0.739952
Target:  5'- uGCGCGGCGUg-CGcCUGCuCUC-CGCg -3'
miRNA:   3'- gCGCGUCGUAgaGCaGGCG-GAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 133590 0.66 0.739952
Target:  5'- cCGCGCuGGCGcugCUCacgGcCCaCCUCGCGCu -3'
miRNA:   3'- -GCGCG-UCGUa--GAG---CaGGcGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 11044 0.66 0.739952
Target:  5'- cCG-GCGGCA-CUCGggcgCCGCCcagGCGCc -3'
miRNA:   3'- -GCgCGUCGUaGAGCa---GGCGGag-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 96760 0.66 0.737091
Target:  5'- gGcCGCGGCcuucucuugccuccGUCUCuUCCGCCUC-CGUc -3'
miRNA:   3'- gC-GCGUCG--------------UAGAGcAGGCGGAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 74349 0.66 0.734222
Target:  5'- gGCGCGGCggCggaaggggcggccgCGUCCGCC-CcCGCc -3'
miRNA:   3'- gCGCGUCGuaGa-------------GCAGGCGGaGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 93827 0.66 0.731345
Target:  5'- cCGcCGCAGCcgCcgggCGgcgCCGCCgagcaguccacgaggCGCGCg -3'
miRNA:   3'- -GC-GCGUCGuaGa---GCa--GGCGGa--------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102674 0.66 0.730385
Target:  5'- gGCGCccAGCGcCgCGUCCGCCgcggcCGuCGCu -3'
miRNA:   3'- gCGCG--UCGUaGaGCAGGCGGa----GC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 2262 0.66 0.730385
Target:  5'- cCGC-CGGCG-CUCGUCCucGCCgggCgGCGCc -3'
miRNA:   3'- -GCGcGUCGUaGAGCAGG--CGGa--G-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 4478 0.66 0.730385
Target:  5'- uCGCGCGGCGcCgcggCGUa-GCCU-GCGCg -3'
miRNA:   3'- -GCGCGUCGUaGa---GCAggCGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 29865 0.66 0.730385
Target:  5'- cCGCGCGGCGcCggCGccgcugCCGCCa-GCGCc -3'
miRNA:   3'- -GCGCGUCGUaGa-GCa-----GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 32562 0.66 0.730385
Target:  5'- gGCGC-GCGUggaagugcucucCUCGUCCGCgUCcucCGCg -3'
miRNA:   3'- gCGCGuCGUA------------GAGCAGGCGgAGc--GCG- -5'
23616 5' -59.5 NC_005261.1 + 68304 0.66 0.730385
Target:  5'- gGCGCGGaCcUCUgCGgCCGCUUCGaCGUg -3'
miRNA:   3'- gCGCGUC-GuAGA-GCaGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 106544 0.66 0.730385
Target:  5'- uCG-GCGGCGgccgCGUCCggGCCggCGCGCg -3'
miRNA:   3'- -GCgCGUCGUaga-GCAGG--CGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 98759 0.66 0.730385
Target:  5'- cCGCGCGGUugccgCUgccgccgcCGgCCGCCggcCGCGCg -3'
miRNA:   3'- -GCGCGUCGua---GA--------GCaGGCGGa--GCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.