miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 32562 0.66 0.730385
Target:  5'- gGCGC-GCGUggaagugcucucCUCGUCCGCgUCcucCGCg -3'
miRNA:   3'- gCGCGuCGUA------------GAGCAGGCGgAGc--GCG- -5'
23616 5' -59.5 NC_005261.1 + 68304 0.66 0.730385
Target:  5'- gGCGCGGaCcUCUgCGgCCGCUUCGaCGUg -3'
miRNA:   3'- gCGCGUC-GuAGA-GCaGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 106544 0.66 0.730385
Target:  5'- uCG-GCGGCGgccgCGUCCggGCCggCGCGCg -3'
miRNA:   3'- -GCgCGUCGUaga-GCAGG--CGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101878 0.66 0.730385
Target:  5'- cCGCGC-GCAgggCGcCCaGCCgCGCGCg -3'
miRNA:   3'- -GCGCGuCGUagaGCaGG-CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 9995 0.66 0.727498
Target:  5'- gGCGCGGCcacccgCUUG-CCacccgaccgggcggGCCUCGCGUc -3'
miRNA:   3'- gCGCGUCGua----GAGCaGG--------------CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 64798 0.66 0.727498
Target:  5'- gGCGCAGCG-C-CGUUcacgcgcgcgcgcgCGCCgCGCGCc -3'
miRNA:   3'- gCGCGUCGUaGaGCAG--------------GCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 3885 0.66 0.726535
Target:  5'- gCGCGCAGC-UCggcgagcgcggcgCGggCGCC-CGCGCc -3'
miRNA:   3'- -GCGCGUCGuAGa------------GCagGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 109040 0.67 0.720736
Target:  5'- gCGCGCAGCcgCgCGgCCGCCagGUaGCc -3'
miRNA:   3'- -GCGCGUCGuaGaGCaGGCGGagCG-CG- -5'
23616 5' -59.5 NC_005261.1 + 64601 0.67 0.720736
Target:  5'- uGCuGCAGCAg-----CCGCCgCGCGCg -3'
miRNA:   3'- gCG-CGUCGUagagcaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 52632 0.67 0.720736
Target:  5'- uCGCGCGGUacgguacacGUCUcCGcCCccgGCCcCGCGCg -3'
miRNA:   3'- -GCGCGUCG---------UAGA-GCaGG---CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 60360 0.67 0.720736
Target:  5'- gCGCGCcaGGCAgugcuuggUCUCGUUggcgaggugCGCCUCcaugGCGCc -3'
miRNA:   3'- -GCGCG--UCGU--------AGAGCAG---------GCGGAG----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 74689 0.67 0.720736
Target:  5'- cCGCGCGGgAgCUgG-CCGCCgcgCGgGCg -3'
miRNA:   3'- -GCGCGUCgUaGAgCaGGCGGa--GCgCG- -5'
23616 5' -59.5 NC_005261.1 + 78346 0.67 0.720736
Target:  5'- -aCGCGGUAcCUCGggCGCCaCGCGCc -3'
miRNA:   3'- gcGCGUCGUaGAGCagGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 97798 0.67 0.720736
Target:  5'- gGC-CGGCGaC-CGUCCGCCg-GCGCc -3'
miRNA:   3'- gCGcGUCGUaGaGCAGGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101631 0.67 0.720736
Target:  5'- uCGCGCcGCGgccgCGUCgCGCCgcacCGUGCu -3'
miRNA:   3'- -GCGCGuCGUaga-GCAG-GCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133267 0.67 0.720736
Target:  5'- gCGCGCgaguaccagGGCGcCggCGcCCGCCUCGUGg -3'
miRNA:   3'- -GCGCG---------UCGUaGa-GCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 32724 0.67 0.720736
Target:  5'- -cCGCcccCGUCUcCGUCCGCuCUgCGCGCg -3'
miRNA:   3'- gcGCGuc-GUAGA-GCAGGCG-GA-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 51883 0.67 0.711015
Target:  5'- cCGCGCGGCAgcagCggcgCGcuacaUCGCCcgggCGCGCa -3'
miRNA:   3'- -GCGCGUCGUa---Ga---GCa----GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 117463 0.67 0.711015
Target:  5'- gGUGCGGCAggUCGgCgGCgaCGCGCu -3'
miRNA:   3'- gCGCGUCGUagAGCaGgCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103741 0.67 0.711015
Target:  5'- gGCgGCGGCGccCUCcgccUgCGCCUCGUGCa -3'
miRNA:   3'- gCG-CGUCGUa-GAGc---AgGCGGAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.