miRNA display CGI


Results 101 - 120 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 96948 0.67 0.711015
Target:  5'- aCGgGC-GCAUCggCGgggcagCCGCCggGCGCg -3'
miRNA:   3'- -GCgCGuCGUAGa-GCa-----GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103741 0.67 0.711015
Target:  5'- gGCgGCGGCGccCUCcgccUgCGCCUCGUGCa -3'
miRNA:   3'- gCG-CGUCGUa-GAGc---AgGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 117463 0.67 0.711015
Target:  5'- gGUGCGGCAggUCGgCgGCgaCGCGCu -3'
miRNA:   3'- gCGCGUCGUagAGCaGgCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 51883 0.67 0.711015
Target:  5'- cCGCGCGGCAgcagCggcgCGcuacaUCGCCcgggCGCGCa -3'
miRNA:   3'- -GCGCGUCGUa---Ga---GCa----GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 73795 0.67 0.711015
Target:  5'- gCGCGCGGCgGUCggcgCGcagaagCCGCgCcCGCGCc -3'
miRNA:   3'- -GCGCGUCG-UAGa---GCa-----GGCG-GaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 57984 0.67 0.70123
Target:  5'- gCGCGCGGCcgCg---CCGCCaaaaaGCGCc -3'
miRNA:   3'- -GCGCGUCGuaGagcaGGCGGag---CGCG- -5'
23616 5' -59.5 NC_005261.1 + 115917 0.67 0.70123
Target:  5'- aGCGcCGGCcgCcgCGUCCGCg-CGCGg -3'
miRNA:   3'- gCGC-GUCGuaGa-GCAGGCGgaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 46972 0.67 0.70123
Target:  5'- uCGcCGCuGCcgC-CGcCCGCCggcagCGCGCg -3'
miRNA:   3'- -GC-GCGuCGuaGaGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 88565 0.67 0.70123
Target:  5'- aGCGcCGGCGaCgCGUcCCGCUUCGcCGCc -3'
miRNA:   3'- gCGC-GUCGUaGaGCA-GGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 115958 0.67 0.70123
Target:  5'- aCGCGCccAGCAcCUCGUCCuCCgagguguagUCGuCGCu -3'
miRNA:   3'- -GCGCG--UCGUaGAGCAGGcGG---------AGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 127806 0.67 0.70123
Target:  5'- gCGcCGCGGCGg--CGggCCG-CUCGCGCu -3'
miRNA:   3'- -GC-GCGUCGUagaGCa-GGCgGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101597 0.67 0.70123
Target:  5'- cCGCGCGcGCcgCcuUUG-CCGCCUCuaGCGCc -3'
miRNA:   3'- -GCGCGU-CGuaG--AGCaGGCGGAG--CGCG- -5'
23616 5' -59.5 NC_005261.1 + 93228 0.67 0.692375
Target:  5'- aGCGCGGCAaaaaagCGgCCGCCgucgccuucgaccggCGCGCc -3'
miRNA:   3'- gCGCGUCGUaga---GCaGGCGGa--------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 123956 0.67 0.691389
Target:  5'- aGCGCAGCGcC-CGcUCCGCga-GCGCu -3'
miRNA:   3'- gCGCGUCGUaGaGC-AGGCGgagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 1718 0.67 0.691389
Target:  5'- uCGCGCGGCGgcaCGggcaCCGCggUGCGCg -3'
miRNA:   3'- -GCGCGUCGUagaGCa---GGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 68669 0.67 0.691389
Target:  5'- cCGCGCcGCcgg-CGUCCGCCgCGUGg -3'
miRNA:   3'- -GCGCGuCGuagaGCAGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 77044 0.67 0.691389
Target:  5'- gCGCGCGGCc-CUCGgcgacCgCGCCUggccggugcCGCGCg -3'
miRNA:   3'- -GCGCGUCGuaGAGCa----G-GCGGA---------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 117949 0.67 0.691389
Target:  5'- gCGCGCucgcugcuacgGGCGcgCUCG-CUGCCaugggCGCGCa -3'
miRNA:   3'- -GCGCG-----------UCGUa-GAGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 126459 0.67 0.691389
Target:  5'- cCGCGcCAGCg---CGcUCGCCUCGCGg -3'
miRNA:   3'- -GCGC-GUCGuagaGCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 116163 0.67 0.691389
Target:  5'- gCGCGCGGUcgCggccgCGUCCccgacGCCgcugggCGCGUc -3'
miRNA:   3'- -GCGCGUCGuaGa----GCAGG-----CGGa-----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.