miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 35017 0.72 0.405488
Target:  5'- uGCGgcCGGCGUCUCGgUCGCUggCGCGCc -3'
miRNA:   3'- gCGC--GUCGUAGAGCaGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 35060 0.66 0.74943
Target:  5'- cCGCGCGGCggcgGUCUCcgcgCCcCCUCGCc- -3'
miRNA:   3'- -GCGCGUCG----UAGAGca--GGcGGAGCGcg -5'
23616 5' -59.5 NC_005261.1 + 38286 0.69 0.562027
Target:  5'- gGUGCAcGCGgugCUgGcCCGCCUgagCGCGCa -3'
miRNA:   3'- gCGCGU-CGUa--GAgCaGGCGGA---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 38490 0.66 0.777237
Target:  5'- cCGCgGCGGCGUCgacuggagCGUCguauaaggcgcgCGCUggcugCGCGCg -3'
miRNA:   3'- -GCG-CGUCGUAGa-------GCAG------------GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 39165 0.66 0.777237
Target:  5'- cCGCGaCAacGCG-CUCGggcCCGaCUCGCGCc -3'
miRNA:   3'- -GCGC-GU--CGUaGAGCa--GGCgGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 39353 0.66 0.777237
Target:  5'- gCGCGCGGCGgca-G-CCGCCUCaucgGCGg -3'
miRNA:   3'- -GCGCGUCGUagagCaGGCGGAG----CGCg -5'
23616 5' -59.5 NC_005261.1 + 39562 0.68 0.621638
Target:  5'- gCGCGCGGCgGUCU-GUCCcCCUCucccuccccaGCGCc -3'
miRNA:   3'- -GCGCGUCG-UAGAgCAGGcGGAG----------CGCG- -5'
23616 5' -59.5 NC_005261.1 + 42242 0.79 0.164796
Target:  5'- gCGCGCAGCGcCUCGaaCUGCC-CGCGCg -3'
miRNA:   3'- -GCGCGUCGUaGAGCa-GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 42494 0.68 0.641642
Target:  5'- uGCGCGGCGaCgcgCGUCgCGCC-CGUGa -3'
miRNA:   3'- gCGCGUCGUaGa--GCAG-GCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 42614 0.71 0.489038
Target:  5'- uCGCGCGGCgcaaaguccagcgggGaCUCGgCCGCCgcggcCGCGCg -3'
miRNA:   3'- -GCGCGUCG---------------UaGAGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 43144 0.67 0.691389
Target:  5'- gCGCGCGGCcugCgCG-CCGCCgacaUCGCGg -3'
miRNA:   3'- -GCGCGUCGua-GaGCaGGCGG----AGCGCg -5'
23616 5' -59.5 NC_005261.1 + 43270 0.66 0.758809
Target:  5'- uGCGUucggGGCGUCgCGgCCGCCUUucccgcgggggGCGCc -3'
miRNA:   3'- gCGCG----UCGUAGaGCaGGCGGAG-----------CGCG- -5'
23616 5' -59.5 NC_005261.1 + 43369 0.66 0.758809
Target:  5'- cCGCuGCGGCGg--CaUCgGCCUCGCGg -3'
miRNA:   3'- -GCG-CGUCGUagaGcAGgCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 44022 0.71 0.485313
Target:  5'- gGCGCGGCGgg-CGgCCGCCgCGCGg -3'
miRNA:   3'- gCGCGUCGUagaGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 44249 0.68 0.651637
Target:  5'- gCGCGCGGCcga-CG-CCGCggCGCGCg -3'
miRNA:   3'- -GCGCGUCGuagaGCaGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 45065 0.69 0.580786
Target:  5'- gGCGgGGCcgcccacuuucacGUCgUCGUCCGUCaCGCGCc -3'
miRNA:   3'- gCGCgUCG-------------UAG-AGCAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 45415 0.71 0.466897
Target:  5'- uGCuGCGGCGcCUgCGcCCGCCgcccgCGCGCa -3'
miRNA:   3'- gCG-CGUCGUaGA-GCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 46059 0.68 0.621638
Target:  5'- aGgGCAGCGggaagggCG-CCGCCUCGUGg -3'
miRNA:   3'- gCgCGUCGUaga----GCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 46520 0.74 0.327135
Target:  5'- uCGCGCAGCA-C-CGccUCCGCUgCGCGCu -3'
miRNA:   3'- -GCGCGUCGUaGaGC--AGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 46562 0.7 0.504069
Target:  5'- aGCGCgAGCGcugCUgCGagcgCgGCCUCGCGCg -3'
miRNA:   3'- gCGCG-UCGUa--GA-GCa---GgCGGAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.