miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 46972 0.67 0.70123
Target:  5'- uCGcCGCuGCcgC-CGcCCGCCggcagCGCGCg -3'
miRNA:   3'- -GC-GCGuCGuaGaGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 47623 0.68 0.661617
Target:  5'- gGgGCGGCcgCgg--CCGCCgCGCGCa -3'
miRNA:   3'- gCgCGUCGuaGagcaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 47681 0.69 0.591707
Target:  5'- aGCGCAGCA---CGgCCGCC-CGCGg -3'
miRNA:   3'- gCGCGUCGUagaGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 47921 0.75 0.272944
Target:  5'- cCGCGCGGcCGUCaCGUCCcgcgcGCCgCGCGCg -3'
miRNA:   3'- -GCGCGUC-GUAGaGCAGG-----CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 48509 0.69 0.601665
Target:  5'- uGCGCAGguUCUUGacgcgcgcgCCGCCUgggaaagucugCGUGCu -3'
miRNA:   3'- gCGCGUCguAGAGCa--------GGCGGA-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 48814 0.76 0.242307
Target:  5'- uGCGCGGCGUCcgcgacgccgucgUCGgccCCGCCgcCGCGCa -3'
miRNA:   3'- gCGCGUCGUAG-------------AGCa--GGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 48933 0.68 0.611644
Target:  5'- aGCGCcGCuGUCUCGacggcgcCCGCCUCGgugaGCa -3'
miRNA:   3'- gCGCGuCG-UAGAGCa------GGCGGAGCg---CG- -5'
23616 5' -59.5 NC_005261.1 + 49107 0.7 0.494651
Target:  5'- gCGCGCAGCAgcucCUCGagCGCggCGgGCg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCagGCGgaGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 49233 0.69 0.548311
Target:  5'- aGCGCGcGCAggUCGgccgCCGCCgcggcggcgucggCGCGCa -3'
miRNA:   3'- gCGCGU-CGUagAGCa---GGCGGa------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 49315 0.69 0.591707
Target:  5'- cCGCGCAGCc-CUCGagCCGgaaCUCGaCGCg -3'
miRNA:   3'- -GCGCGUCGuaGAGCa-GGCg--GAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 50423 0.66 0.768081
Target:  5'- uCGCGgAGCcgCUCGUgCaGCgUgCGCGUg -3'
miRNA:   3'- -GCGCgUCGuaGAGCAgG-CGgA-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 50520 0.69 0.550264
Target:  5'- aGCGCAGCAgggCcgUCGUCuUGCCcgagcccaucggCGCGCg -3'
miRNA:   3'- gCGCGUCGUa--G--AGCAG-GCGGa-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 50825 0.66 0.777237
Target:  5'- cCGCGCGGCuuggCG-CCGCgagCUgGCGCc -3'
miRNA:   3'- -GCGCGUCGuagaGCaGGCG---GAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 51008 0.66 0.777237
Target:  5'- gGCGCGGCGggagCUCGgcgagCGCCacccgGCGCu -3'
miRNA:   3'- gCGCGUCGUa---GAGCag---GCGGag---CGCG- -5'
23616 5' -59.5 NC_005261.1 + 51184 0.68 0.63164
Target:  5'- aCGCGCuGGCGacgCUCGcCaCGCCcccgggCGCGCu -3'
miRNA:   3'- -GCGCG-UCGUa--GAGCaG-GCGGa-----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 51548 0.66 0.762531
Target:  5'- aGCGCAGacaGUCgcCGcaggcauaaccgucuUCUGCCUCGcCGCc -3'
miRNA:   3'- gCGCGUCg--UAGa-GC---------------AGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 51883 0.67 0.711015
Target:  5'- cCGCGCGGCAgcagCggcgCGcuacaUCGCCcgggCGCGCa -3'
miRNA:   3'- -GCGCGUCGUa---Ga---GCa----GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 52632 0.67 0.720736
Target:  5'- uCGCGCGGUacgguacacGUCUcCGcCCccgGCCcCGCGCg -3'
miRNA:   3'- -GCGCGUCG---------UAGA-GCaGG---CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 53135 0.67 0.691389
Target:  5'- aGgGCGGCGUacgCG-CgCGCCgUCGCGCc -3'
miRNA:   3'- gCgCGUCGUAga-GCaG-GCGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 53769 0.66 0.767159
Target:  5'- cCGCGCGGCAaacgaccgggUCgucgccgucgccuUCGcccgCCGCCUCG-GCc -3'
miRNA:   3'- -GCGCGUCGU----------AG-------------AGCa---GGCGGAGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.