miRNA display CGI


Results 101 - 120 of 355 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 53870 0.68 0.618639
Target:  5'- aGCGCGGCgcgcgcgcugucgaGUCgaagCGggcCCGCUUCGCGa -3'
miRNA:   3'- gCGCGUCG--------------UAGa---GCa--GGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 53943 0.69 0.591707
Target:  5'- aGCGCGGCg---CG-CCGCgCUCGCGg -3'
miRNA:   3'- gCGCGUCGuagaGCaGGCG-GAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 53998 0.71 0.466897
Target:  5'- gCGCGCGGCGcacaggCG-CCGCCgcgagcgcuUCGCGCa -3'
miRNA:   3'- -GCGCGUCGUaga---GCaGGCGG---------AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 54372 0.67 0.681501
Target:  5'- gCGgGCAGCggCUCGgggCGCC-CGCGa -3'
miRNA:   3'- -GCgCGUCGuaGAGCag-GCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 54420 0.7 0.504069
Target:  5'- uCGaGgAGCAUCUCcgagggCCGCgUCGCGCa -3'
miRNA:   3'- -GCgCgUCGUAGAGca----GGCGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 54730 0.66 0.758809
Target:  5'- cCGCGCGGCcga--GUCCGaCgaaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuagagCAGGCgGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 55043 0.68 0.655631
Target:  5'- cCGCGCAGCugcgcggggccggcgAgCUCGgCCGCCgaaggcaUGCGCa -3'
miRNA:   3'- -GCGCGUCG---------------UaGAGCaGGCGGa------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 55802 0.67 0.671574
Target:  5'- gCGCGCGGCc-UUCG-CCGCCguaaaggCGUGUa -3'
miRNA:   3'- -GCGCGUCGuaGAGCaGGCGGa------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 57279 0.69 0.591707
Target:  5'- uCGCGCGGCAgcugCUCGcgaGCagcCGCGCg -3'
miRNA:   3'- -GCGCGUCGUa---GAGCaggCGga-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 57984 0.67 0.70123
Target:  5'- gCGCGCGGCcgCg---CCGCCaaaaaGCGCc -3'
miRNA:   3'- -GCGCGUCGuaGagcaGGCGGag---CGCG- -5'
23616 5' -59.5 NC_005261.1 + 58184 0.68 0.661617
Target:  5'- gGUGCAGgCAgcccagCUCcUCCGUCagCGCGCg -3'
miRNA:   3'- gCGCGUC-GUa-----GAGcAGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 58263 0.68 0.651637
Target:  5'- cCGCGCcGCG-CUCG-CCGCgCUCacggggccgGCGCg -3'
miRNA:   3'- -GCGCGuCGUaGAGCaGGCG-GAG---------CGCG- -5'
23616 5' -59.5 NC_005261.1 + 58321 0.66 0.739952
Target:  5'- gGCcCAGCcgCcCGagcaCCGCCUCGCGg -3'
miRNA:   3'- gCGcGUCGuaGaGCa---GGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 58495 0.66 0.730385
Target:  5'- gCGCGCGGCcgCUUuuggCGCC-CGCGUc -3'
miRNA:   3'- -GCGCGUCGuaGAGcag-GCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 59062 0.68 0.639642
Target:  5'- gCGCGCGGCcgCggagagcgcgcgCGggugcgCCGCgccCUCGCGCu -3'
miRNA:   3'- -GCGCGUCGuaGa-----------GCa-----GGCG---GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 59268 0.72 0.388897
Target:  5'- aCGCGUcgcacGGCGUgUCG-CCGCCcagcagCGCGCa -3'
miRNA:   3'- -GCGCG-----UCGUAgAGCaGGCGGa-----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 59456 0.68 0.661617
Target:  5'- aGCGCGGCcgCggCGUCggggggcagCGCCg-GCGCg -3'
miRNA:   3'- gCGCGUCGuaGa-GCAG---------GCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 59520 0.66 0.768081
Target:  5'- gCGCGCccuggAGCAgcccCG-CCGCCaccgCGCGCg -3'
miRNA:   3'- -GCGCG-----UCGUaga-GCaGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 60188 0.69 0.581777
Target:  5'- gCGcCGCGGCGgagaaGUCCGCg-CGCGCg -3'
miRNA:   3'- -GC-GCGUCGUagag-CAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 60360 0.67 0.720736
Target:  5'- gCGCGCcaGGCAgugcuuggUCUCGUUggcgaggugCGCCUCcaugGCGCc -3'
miRNA:   3'- -GCGCG--UCGU--------AGAGCAG---------GCGGAG----CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.