miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 129327 0.69 0.601665
Target:  5'- gGCGCcGCGUCg---CCGaCCUCGcCGCg -3'
miRNA:   3'- gCGCGuCGUAGagcaGGC-GGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 128838 0.69 0.581777
Target:  5'- uCGCGCGGCuggCcgccaCGgugccCCGCCUCGuCGCu -3'
miRNA:   3'- -GCGCGUCGua-Ga----GCa----GGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 128400 0.68 0.655631
Target:  5'- uCGCGCcGCAUCgCGUCCaGCaaggggucaaggcCGCGCa -3'
miRNA:   3'- -GCGCGuCGUAGaGCAGG-CGga-----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 127806 0.67 0.70123
Target:  5'- gCGcCGCGGCGg--CGggCCG-CUCGCGCu -3'
miRNA:   3'- -GC-GCGUCGUagaGCa-GGCgGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 126776 0.7 0.504069
Target:  5'- gGCGCccacuaccGCGUCUgCGUCUGCCgagagcaGCGCg -3'
miRNA:   3'- gCGCGu-------CGUAGA-GCAGGCGGag-----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 126530 0.72 0.388897
Target:  5'- cCGCGCccgccGCGcCUCGgccacgcgCCGCCgUCGCGCg -3'
miRNA:   3'- -GCGCGu----CGUaGAGCa-------GGCGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 126459 0.67 0.691389
Target:  5'- cCGCGcCAGCg---CGcUCGCCUCGCGg -3'
miRNA:   3'- -GCGC-GUCGuagaGCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 125323 0.71 0.448848
Target:  5'- -cCGCGGCcUCggCGUCCGCagCGCGCa -3'
miRNA:   3'- gcGCGUCGuAGa-GCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124795 0.66 0.758809
Target:  5'- -cCGaCAGCcgCUCGUCgCGCUcuaggUGCGCg -3'
miRNA:   3'- gcGC-GUCGuaGAGCAG-GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124607 0.68 0.63164
Target:  5'- gCGUGCGGCAUagcgCGUCCaGCggcaUCuGCGCg -3'
miRNA:   3'- -GCGCGUCGUAga--GCAGG-CGg---AG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 124315 0.78 0.1819
Target:  5'- aCGCGCAGCAgcgCGUCCGCCaaaaagagcaGCGCc -3'
miRNA:   3'- -GCGCGUCGUagaGCAGGCGGag--------CGCG- -5'
23616 5' -59.5 NC_005261.1 + 124260 0.68 0.611644
Target:  5'- cCGCGCGGCg------CCGCC-CGCGCg -3'
miRNA:   3'- -GCGCGUCGuagagcaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124007 0.72 0.388897
Target:  5'- gCGCGUAGCG-CUCGUuuGCCguguagcCGgGCg -3'
miRNA:   3'- -GCGCGUCGUaGAGCAggCGGa------GCgCG- -5'
23616 5' -59.5 NC_005261.1 + 123956 0.67 0.691389
Target:  5'- aGCGCAGCGcC-CGcUCCGCga-GCGCu -3'
miRNA:   3'- gCGCGUCGUaGaGC-AGGCGgagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 123838 0.71 0.448848
Target:  5'- uCGUGCAGCGUCgCG-CUGCCUaGCGg -3'
miRNA:   3'- -GCGCGUCGUAGaGCaGGCGGAgCGCg -5'
23616 5' -59.5 NC_005261.1 + 122664 0.66 0.758809
Target:  5'- gGCGCgaagAGCAUCaCGUUCGUCagcUGCGCc -3'
miRNA:   3'- gCGCG----UCGUAGaGCAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 122410 0.67 0.671574
Target:  5'- uGCGCAGCA-C-CGUgCCGUCaaGCGUg -3'
miRNA:   3'- gCGCGUCGUaGaGCA-GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 122338 0.7 0.542464
Target:  5'- gGCGCucGCAgagCUCGccuggcggCCGCggCUCGCGCg -3'
miRNA:   3'- gCGCGu-CGUa--GAGCa-------GGCG--GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 121811 0.66 0.768081
Target:  5'- gCGCGUGGCugggcUCUgCGggCCGCCgcggCgGCGCa -3'
miRNA:   3'- -GCGCGUCGu----AGA-GCa-GGCGGa---G-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 121075 0.68 0.611644
Target:  5'- uGCGCGGCGcCggCGgCCGCCa-GCGCc -3'
miRNA:   3'- gCGCGUCGUaGa-GCaGGCGGagCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.