miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 120442 0.66 0.739952
Target:  5'- uGCGCGGCGUg-CGcCUGCuCUC-CGCg -3'
miRNA:   3'- gCGCGUCGUAgaGCaGGCG-GAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 120330 0.66 0.768081
Target:  5'- gCGCGCuGCGUCcccgagcgCGUCUcCCU-GCGCu -3'
miRNA:   3'- -GCGCGuCGUAGa-------GCAGGcGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 119139 0.86 0.055855
Target:  5'- gGCGCGGcCAUCUCGgaUCCGCC-CGCGCg -3'
miRNA:   3'- gCGCGUC-GUAGAGC--AGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 118577 0.74 0.334443
Target:  5'- gCGCGCGGCGgcgCGcgCCGCCgccgcggagcUCGCGCu -3'
miRNA:   3'- -GCGCGUCGUagaGCa-GGCGG----------AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 118108 0.72 0.422518
Target:  5'- cCGCGCAGacgCUgCG-CCGCCggcUCGCGCc -3'
miRNA:   3'- -GCGCGUCguaGA-GCaGGCGG---AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 118076 0.66 0.768081
Target:  5'- gGcCGCAGCcgcgCUCGUCUGCUg-GCGg -3'
miRNA:   3'- gC-GCGUCGua--GAGCAGGCGGagCGCg -5'
23616 5' -59.5 NC_005261.1 + 117949 0.67 0.691389
Target:  5'- gCGCGCucgcugcuacgGGCGcgCUCG-CUGCCaugggCGCGCa -3'
miRNA:   3'- -GCGCG-----------UCGUa-GAGCaGGCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 117463 0.67 0.711015
Target:  5'- gGUGCGGCAggUCGgCgGCgaCGCGCu -3'
miRNA:   3'- gCGCGUCGUagAGCaGgCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 117230 0.74 0.324965
Target:  5'- gGCGCcgAGUccgccucgggucggGUCUCGUUCGCCgCGCGCc -3'
miRNA:   3'- gCGCG--UCG--------------UAGAGCAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 116496 0.69 0.581777
Target:  5'- gCGCGCGGUAUaaagagCG-CCGCCgcggCgGCGCg -3'
miRNA:   3'- -GCGCGUCGUAga----GCaGGCGGa---G-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 116353 0.76 0.248663
Target:  5'- cCGUGCGGguUCgucCGUgCCGCCgCGCGCa -3'
miRNA:   3'- -GCGCGUCguAGa--GCA-GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 116163 0.67 0.691389
Target:  5'- gCGCGCGGUcgCggccgCGUCCccgacGCCgcugggCGCGUc -3'
miRNA:   3'- -GCGCGUCGuaGa----GCAGG-----CGGa-----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 115958 0.67 0.70123
Target:  5'- aCGCGCccAGCAcCUCGUCCuCCgagguguagUCGuCGCu -3'
miRNA:   3'- -GCGCG--UCGUaGAGCAGGcGG---------AGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 115917 0.67 0.70123
Target:  5'- aGCGcCGGCcgCcgCGUCCGCg-CGCGg -3'
miRNA:   3'- gCGC-GUCGuaGa-GCAGGCGgaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 115825 0.66 0.74943
Target:  5'- aCGCGguGCGccagcUUgggcgCGUUgGCC-CGCGCg -3'
miRNA:   3'- -GCGCguCGU-----AGa----GCAGgCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 115536 0.68 0.642642
Target:  5'- aGCGCAGCAUCggcggcuggugcagGUCCGUgUgGCaGCa -3'
miRNA:   3'- gCGCGUCGUAGag------------CAGGCGgAgCG-CG- -5'
23616 5' -59.5 NC_005261.1 + 115445 0.66 0.74943
Target:  5'- uCGCGCucGCGgccggaCUCcUCCGCCUCGgugucgguCGCg -3'
miRNA:   3'- -GCGCGu-CGUa-----GAGcAGGCGGAGC--------GCG- -5'
23616 5' -59.5 NC_005261.1 + 113111 0.68 0.661617
Target:  5'- aGCuCGGCAuggacaugcUCUCGcCCGCCgCGCGg -3'
miRNA:   3'- gCGcGUCGU---------AGAGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 112479 0.73 0.36486
Target:  5'- uGCGCGGCAUgCUCGcCCGCgacgagucaaCGCGCu -3'
miRNA:   3'- gCGCGUCGUA-GAGCaGGCGga--------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 111303 0.66 0.777237
Target:  5'- cCGcCGCuGCcUC-CG-CCGCCgccgCGCGCu -3'
miRNA:   3'- -GC-GCGuCGuAGaGCaGGCGGa---GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.