miRNA display CGI


Results 61 - 80 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 110869 0.66 0.739952
Target:  5'- cCGCGCGGCcuaccgCUgccCCGUCUCGCGg -3'
miRNA:   3'- -GCGCGUCGua----GAgcaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 109331 0.66 0.739952
Target:  5'- aGCGCGGCcgCggggUCGgcggCCGCgUCGcCGUc -3'
miRNA:   3'- gCGCGUCGuaG----AGCa---GGCGgAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 109206 0.69 0.55222
Target:  5'- uGCGCAgGCG-CUCGUaggcgcggcaCGCCgCGCGCu -3'
miRNA:   3'- gCGCGU-CGUaGAGCAg---------GCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 109040 0.67 0.720736
Target:  5'- gCGCGCAGCcgCgCGgCCGCCagGUaGCc -3'
miRNA:   3'- -GCGCGUCGuaGaGCaGGCGGagCG-CG- -5'
23616 5' -59.5 NC_005261.1 + 108747 0.72 0.431192
Target:  5'- gGCGCcGCGg--CGUCCGCggCGCGCc -3'
miRNA:   3'- gCGCGuCGUagaGCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108669 0.69 0.591707
Target:  5'- gGCGUcGCGUCcucgUCGUCCGgCUCGgGg -3'
miRNA:   3'- gCGCGuCGUAG----AGCAGGCgGAGCgCg -5'
23616 5' -59.5 NC_005261.1 + 108581 0.66 0.74943
Target:  5'- gCGCGCgaaGGCGUuggcCUCGcCCacgggcaccagcGCCUCGgGCg -3'
miRNA:   3'- -GCGCG---UCGUA----GAGCaGG------------CGGAGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 108522 0.71 0.485313
Target:  5'- cCGCGCacgaaGGgGUCUCGguaggccagcgCCGCCgacaCGCGCa -3'
miRNA:   3'- -GCGCG-----UCgUAGAGCa----------GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108361 0.69 0.601665
Target:  5'- cCGuCGCAggcGCAUCccugcccgCGUCCGCgCcCGCGCg -3'
miRNA:   3'- -GC-GCGU---CGUAGa-------GCAGGCG-GaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108262 0.7 0.494651
Target:  5'- cCGCGgcCAGCGUCUCcacggccugGUCCgGCgUUGCGCu -3'
miRNA:   3'- -GCGC--GUCGUAGAG---------CAGG-CGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 108157 0.73 0.35708
Target:  5'- cCGCcuGCAGCg---CGUCCGCCagggCGCGCg -3'
miRNA:   3'- -GCG--CGUCGuagaGCAGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 107779 0.68 0.641642
Target:  5'- gCGCGCGGUcgaaccaCGUUaggaggGCCUCGCGCg -3'
miRNA:   3'- -GCGCGUCGuaga---GCAGg-----CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 107630 0.72 0.397137
Target:  5'- uGCGCGGgAaCUCGagCGCC-CGCGCu -3'
miRNA:   3'- gCGCGUCgUaGAGCagGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106987 0.72 0.397137
Target:  5'- cCGCGCAccGCGUCggccagGUCCGCCgaGCGCc -3'
miRNA:   3'- -GCGCGU--CGUAGag----CAGGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106945 0.69 0.571882
Target:  5'- aCGCGCAc---CUCGgcccgggcgcgcUCCGCCUCgGCGCg -3'
miRNA:   3'- -GCGCGUcguaGAGC------------AGGCGGAG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 106897 0.68 0.621638
Target:  5'- aGCGCcuGCGUCguccgCG-CCGCggCGCGCu -3'
miRNA:   3'- gCGCGu-CGUAGa----GCaGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106834 0.66 0.758809
Target:  5'- gCGUGguGCGcgUCGUCCaGCC-CGcCGCc -3'
miRNA:   3'- -GCGCguCGUagAGCAGG-CGGaGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 106590 0.69 0.560062
Target:  5'- cCGCGCGGCGcuccuccuggacCUCGUCCcagacGCCgcggagcCGCGCg -3'
miRNA:   3'- -GCGCGUCGUa-----------GAGCAGG-----CGGa------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106544 0.66 0.730385
Target:  5'- uCG-GCGGCGgccgCGUCCggGCCggCGCGCg -3'
miRNA:   3'- -GCgCGUCGUaga-GCAGG--CGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106341 0.66 0.768081
Target:  5'- cCGcCGCcGCGUC-CGcccCCGCCgcCGCGCu -3'
miRNA:   3'- -GC-GCGuCGUAGaGCa--GGCGGa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.