miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 106201 0.66 0.768081
Target:  5'- gGCGCcguuuaaacaaaAGCGcCcgCGgCCGCCUgGCGCg -3'
miRNA:   3'- gCGCG------------UCGUaGa-GCaGGCGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106131 0.67 0.691389
Target:  5'- gCGCGcCGGCAacgC-CGgacauggugCCGCCUCGcCGCu -3'
miRNA:   3'- -GCGC-GUCGUa--GaGCa--------GGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 105977 0.75 0.272944
Target:  5'- aGCGCGGCGUCgaCG-CCGCC-CGCGa -3'
miRNA:   3'- gCGCGUCGUAGa-GCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 105909 0.66 0.74943
Target:  5'- gGCGCgGGCcgCUCGcgCgCGCCcacgcCGCGCc -3'
miRNA:   3'- gCGCG-UCGuaGAGCa-G-GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105831 0.66 0.758809
Target:  5'- aGaCGCAGCAgagcccgcugUCcgCGUCCGCCcggUCG-GCg -3'
miRNA:   3'- gC-GCGUCGU----------AGa-GCAGGCGG---AGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 105309 0.71 0.485313
Target:  5'- aGCGCGGgGUcCUCGcacUCCGCCcCgGCGCc -3'
miRNA:   3'- gCGCGUCgUA-GAGC---AGGCGGaG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 105191 0.8 0.128209
Target:  5'- cCGcCGCGGCAggCUCGUCCGCUUucccgcCGCGCg -3'
miRNA:   3'- -GC-GCGUCGUa-GAGCAGGCGGA------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105121 0.69 0.601665
Target:  5'- cCGCGCGGg--CgCGggCCGCCggCGCGCg -3'
miRNA:   3'- -GCGCGUCguaGaGCa-GGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104869 0.71 0.484384
Target:  5'- aCGCGUcgaugucAGCGUCgaUCG-CCGCCgCGUGCg -3'
miRNA:   3'- -GCGCG-------UCGUAG--AGCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104587 0.73 0.349416
Target:  5'- uGCGCGcGCAUCgCcUCCGCCagcCGCGCg -3'
miRNA:   3'- gCGCGU-CGUAGaGcAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104546 0.74 0.319945
Target:  5'- gGCGCAGCuuggCGUCCGCCagGuCGCc -3'
miRNA:   3'- gCGCGUCGuagaGCAGGCGGagC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 104329 0.71 0.448848
Target:  5'- aCGCGC-GCGUCcagCGgCCgGCCgUCGCGCa -3'
miRNA:   3'- -GCGCGuCGUAGa--GCaGG-CGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104182 0.71 0.476061
Target:  5'- gCGCGCGGguCGUCgggcgggacggCGUCCagGCgCUCGCGCg -3'
miRNA:   3'- -GCGCGUC--GUAGa----------GCAGG--CG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104123 0.66 0.758809
Target:  5'- cCGCGCGGUucgccgcgagCUCGgCCGCCaggucggccacCGCGCc -3'
miRNA:   3'- -GCGCGUCGua--------GAGCaGGCGGa----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 104053 0.68 0.661617
Target:  5'- uGcCGCAGCGcCUCGgCCGCga-GCGCg -3'
miRNA:   3'- gC-GCGUCGUaGAGCaGGCGgagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103863 0.68 0.641642
Target:  5'- cCGCgGCGGCggCggggCGgcgCCGCCgggcggCGCGCc -3'
miRNA:   3'- -GCG-CGUCGuaGa---GCa--GGCGGa-----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103741 0.67 0.711015
Target:  5'- gGCgGCGGCGccCUCcgccUgCGCCUCGUGCa -3'
miRNA:   3'- gCG-CGUCGUa-GAGc---AgGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103584 0.69 0.562027
Target:  5'- cCGCGCcGUcgCUCG-CCGCCguggcCGCGg -3'
miRNA:   3'- -GCGCGuCGuaGAGCaGGCGGa----GCGCg -5'
23616 5' -59.5 NC_005261.1 + 103527 0.66 0.768081
Target:  5'- -cCGCGGCAUC-CG-CCGCCUCcuCGg -3'
miRNA:   3'- gcGCGUCGUAGaGCaGGCGGAGc-GCg -5'
23616 5' -59.5 NC_005261.1 + 103438 0.68 0.661617
Target:  5'- gCGCGCGcGCGcCUCGcggUCgGCCgcCGCGCc -3'
miRNA:   3'- -GCGCGU-CGUaGAGC---AGgCGGa-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.