miRNA display CGI


Results 101 - 120 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 103382 0.68 0.661617
Target:  5'- gCGCGCcGCcgCgccgCGgCCGCCU-GCGCc -3'
miRNA:   3'- -GCGCGuCGuaGa---GCaGGCGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103227 0.7 0.494651
Target:  5'- aGCGCGcGCAg-UCcUCCGCCgucCGCGCg -3'
miRNA:   3'- gCGCGU-CGUagAGcAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103128 0.69 0.562027
Target:  5'- gCGCGCccGGguUCUCcagCGCCUCGCGg -3'
miRNA:   3'- -GCGCG--UCguAGAGcagGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 102968 0.7 0.513564
Target:  5'- gGCGCcGCGggCUcCG-CCGCCgCGCGCg -3'
miRNA:   3'- gCGCGuCGUa-GA-GCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102913 0.74 0.299091
Target:  5'- -cCGCAGCGcCUcCG-CCGCUUCGCGCa -3'
miRNA:   3'- gcGCGUCGUaGA-GCaGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102803 0.69 0.562027
Target:  5'- aGCGCGGCGcccaG-CCGCCgCGCGCc -3'
miRNA:   3'- gCGCGUCGUagagCaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102674 0.66 0.730385
Target:  5'- gGCGCccAGCGcCgCGUCCGCCgcggcCGuCGCu -3'
miRNA:   3'- gCGCG--UCGUaGaGCAGGCGGa----GC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 102489 0.66 0.739952
Target:  5'- gCGCGCcGCcgCgccagCGcCUggGCCUUGCGCa -3'
miRNA:   3'- -GCGCGuCGuaGa----GCaGG--CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102429 0.7 0.504069
Target:  5'- uGCGCGGCcgccucCUCGgcgcgCCGCCcggccucggCGCGCa -3'
miRNA:   3'- gCGCGUCGua----GAGCa----GGCGGa--------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102387 0.67 0.681501
Target:  5'- aGCGCGGCGcgcagCUCcUCgCGCCa-GCGCu -3'
miRNA:   3'- gCGCGUCGUa----GAGcAG-GCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 102330 0.69 0.562027
Target:  5'- gCGCGCAGCcgcgccagCUCGgCCGCgUCGaagGCg -3'
miRNA:   3'- -GCGCGUCGua------GAGCaGGCGgAGCg--CG- -5'
23616 5' -59.5 NC_005261.1 + 101878 0.66 0.730385
Target:  5'- cCGCGC-GCAgggCGcCCaGCCgCGCGCg -3'
miRNA:   3'- -GCGCGuCGUagaGCaGG-CGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101830 0.76 0.254561
Target:  5'- gCGCGCGGCugaUC-UCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCGUCGuagAGcAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101631 0.67 0.720736
Target:  5'- uCGCGCcGCGgccgCGUCgCGCCgcacCGUGCu -3'
miRNA:   3'- -GCGCGuCGUaga-GCAG-GCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101597 0.67 0.70123
Target:  5'- cCGCGCGcGCcgCcuUUG-CCGCCUCuaGCGCc -3'
miRNA:   3'- -GCGCGU-CGuaG--AGCaGGCGGAG--CGCG- -5'
23616 5' -59.5 NC_005261.1 + 101527 0.66 0.739952
Target:  5'- uCGuCGCGGUcgCgCG-CCGCCUCGgcCGCc -3'
miRNA:   3'- -GC-GCGUCGuaGaGCaGGCGGAGC--GCG- -5'
23616 5' -59.5 NC_005261.1 + 101150 0.7 0.54636
Target:  5'- cCGCGCGGCGgcgCG-CCGCCgcgaagagcucccaCGCGCc -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGGa-------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101112 0.68 0.661617
Target:  5'- gCGCGCcuuGGCGccCUCGUgguCCUCGCGCg -3'
miRNA:   3'- -GCGCG---UCGUa-GAGCAggcGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101048 0.72 0.397137
Target:  5'- gCGCGUAGUG-CUCGUCCGCg-CGCaGCc -3'
miRNA:   3'- -GCGCGUCGUaGAGCAGGCGgaGCG-CG- -5'
23616 5' -59.5 NC_005261.1 + 100980 0.71 0.476061
Target:  5'- gGCGCccagcGCGUCgccgCGcUCCGCCagcCGCGCg -3'
miRNA:   3'- gCGCGu----CGUAGa---GC-AGGCGGa--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.