Results 61 - 80 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 5' | -59.5 | NC_005261.1 | + | 121811 | 0.66 | 0.768081 |
Target: 5'- gCGCGUGGCugggcUCUgCGggCCGCCgcggCgGCGCa -3' miRNA: 3'- -GCGCGUCGu----AGA-GCa-GGCGGa---G-CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 118076 | 0.66 | 0.768081 |
Target: 5'- gGcCGCAGCcgcgCUCGUCUGCUg-GCGg -3' miRNA: 3'- gC-GCGUCGua--GAGCAGGCGGagCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 31987 | 0.66 | 0.758809 |
Target: 5'- cCGCGCAccGCGgugCcCGUgCCGCCgCGCGa -3' miRNA: 3'- -GCGCGU--CGUa--GaGCA-GGCGGaGCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 133325 | 0.66 | 0.758809 |
Target: 5'- uCGCGCAGC-UCcUG-CCGgCaCGCGCg -3' miRNA: 3'- -GCGCGUCGuAGaGCaGGCgGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 124795 | 0.66 | 0.758809 |
Target: 5'- -cCGaCAGCcgCUCGUCgCGCUcuaggUGCGCg -3' miRNA: 3'- gcGC-GUCGuaGAGCAG-GCGGa----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 122664 | 0.66 | 0.758809 |
Target: 5'- gGCGCgaagAGCAUCaCGUUCGUCagcUGCGCc -3' miRNA: 3'- gCGCG----UCGUAGaGCAGGCGGa--GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 106834 | 0.66 | 0.758809 |
Target: 5'- gCGUGguGCGcgUCGUCCaGCC-CGcCGCc -3' miRNA: 3'- -GCGCguCGUagAGCAGG-CGGaGC-GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 104123 | 0.66 | 0.758809 |
Target: 5'- cCGCGCGGUucgccgcgagCUCGgCCGCCaggucggccacCGCGCc -3' miRNA: 3'- -GCGCGUCGua--------GAGCaGGCGGa----------GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 95808 | 0.66 | 0.758809 |
Target: 5'- gGCGcCGGCGggggCUCG-CgGuCCUCGCGg -3' miRNA: 3'- gCGC-GUCGUa---GAGCaGgC-GGAGCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 54730 | 0.66 | 0.758809 |
Target: 5'- cCGCGCGGCcga--GUCCGaCgaaCGCGCg -3' miRNA: 3'- -GCGCGUCGuagagCAGGCgGa--GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 43369 | 0.66 | 0.758809 |
Target: 5'- cCGCuGCGGCGg--CaUCgGCCUCGCGg -3' miRNA: 3'- -GCG-CGUCGUagaGcAGgCGGAGCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 132477 | 0.66 | 0.758809 |
Target: 5'- cCG-GCAGCGcCUCG-CCGuCCUgggaCGCGCc -3' miRNA: 3'- -GCgCGUCGUaGAGCaGGC-GGA----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 81259 | 0.66 | 0.768081 |
Target: 5'- aGCGCgAGU-UCUCcccggCCGCCU-GCGCg -3' miRNA: 3'- gCGCG-UCGuAGAGca---GGCGGAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 50423 | 0.66 | 0.768081 |
Target: 5'- uCGCGgAGCcgCUCGUgCaGCgUgCGCGUg -3' miRNA: 3'- -GCGCgUCGuaGAGCAgG-CGgA-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 5124 | 0.66 | 0.768081 |
Target: 5'- gGCGCgGGCggCcCGcCgGCgCUCGCGCg -3' miRNA: 3'- gCGCG-UCGuaGaGCaGgCG-GAGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 136632 | 0.66 | 0.768081 |
Target: 5'- aGgGCGGCGggaaggcCUgGUCCGCCUgGaGCu -3' miRNA: 3'- gCgCGUCGUa------GAgCAGGCGGAgCgCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 53769 | 0.66 | 0.767159 |
Target: 5'- cCGCGCGGCAaacgaccgggUCgucgccgucgccuUCGcccgCCGCCUCG-GCc -3' miRNA: 3'- -GCGCGUCGU----------AG-------------AGCa---GGCGGAGCgCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 84634 | 0.66 | 0.767159 |
Target: 5'- aGCGCcuccaccAGCGUgUUGUcccggcuggcgCCGCC-CGCGCc -3' miRNA: 3'- gCGCG-------UCGUAgAGCA-----------GGCGGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 51548 | 0.66 | 0.762531 |
Target: 5'- aGCGCAGacaGUCgcCGcaggcauaaccgucuUCUGCCUCGcCGCc -3' miRNA: 3'- gCGCGUCg--UAGa-GC---------------AGGCGGAGC-GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 78891 | 0.66 | 0.762531 |
Target: 5'- uCGCcaGCAGCGgcccgcccuuguugcUCUUcUUCGCCUUGUGCu -3' miRNA: 3'- -GCG--CGUCGU---------------AGAGcAGGCGGAGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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