miRNA display CGI


Results 81 - 100 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 93354 0.66 0.758809
Target:  5'- gCGCGCAGCGcgCgccaGUgCGCCg-GCGUg -3'
miRNA:   3'- -GCGCGUCGUa-Gag--CAgGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15522 0.66 0.758809
Target:  5'- gCGUGCAgGCAggagCggaaggcgUCGUUCGCgaCGCGCg -3'
miRNA:   3'- -GCGCGU-CGUa---G--------AGCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 66627 0.66 0.753193
Target:  5'- uGCGCAuggccgacgagaccuGCGUCccgUCGgCCGCCUCcucCGCg -3'
miRNA:   3'- gCGCGU---------------CGUAG---AGCaGGCGGAGc--GCG- -5'
23616 5' -59.5 NC_005261.1 + 115445 0.66 0.74943
Target:  5'- uCGCGCucGCGgccggaCUCcUCCGCCUCGgugucgguCGCg -3'
miRNA:   3'- -GCGCGu-CGUa-----GAGcAGGCGGAGC--------GCG- -5'
23616 5' -59.5 NC_005261.1 + 108581 0.66 0.74943
Target:  5'- gCGCGCgaaGGCGUuggcCUCGcCCacgggcaccagcGCCUCGgGCg -3'
miRNA:   3'- -GCGCG---UCGUA----GAGCaGG------------CGGAGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 86092 0.66 0.74943
Target:  5'- cCGCGCGu--UCUCGUCggCGCC-CGgGCg -3'
miRNA:   3'- -GCGCGUcguAGAGCAG--GCGGaGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 82400 0.66 0.74943
Target:  5'- cCGCGgGGCcg-UCGUCC-CC-CGCGCc -3'
miRNA:   3'- -GCGCgUCGuagAGCAGGcGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 54730 0.66 0.758809
Target:  5'- cCGCGCGGCcga--GUCCGaCgaaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuagagCAGGCgGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 95808 0.66 0.758809
Target:  5'- gGCGcCGGCGggggCUCG-CgGuCCUCGCGg -3'
miRNA:   3'- gCGC-GUCGUa---GAGCaGgC-GGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 104123 0.66 0.758809
Target:  5'- cCGCGCGGUucgccgcgagCUCGgCCGCCaggucggccacCGCGCc -3'
miRNA:   3'- -GCGCGUCGua--------GAGCaGGCGGa----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 84634 0.66 0.767159
Target:  5'- aGCGCcuccaccAGCGUgUUGUcccggcuggcgCCGCC-CGCGCc -3'
miRNA:   3'- gCGCG-------UCGUAgAGCA-----------GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 51548 0.66 0.762531
Target:  5'- aGCGCAGacaGUCgcCGcaggcauaaccgucuUCUGCCUCGcCGCc -3'
miRNA:   3'- gCGCGUCg--UAGa-GC---------------AGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 78891 0.66 0.762531
Target:  5'- uCGCcaGCAGCGgcccgcccuuguugcUCUUcUUCGCCUUGUGCu -3'
miRNA:   3'- -GCG--CGUCGU---------------AGAGcAGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 132477 0.66 0.758809
Target:  5'- cCG-GCAGCGcCUCG-CCGuCCUgggaCGCGCc -3'
miRNA:   3'- -GCgCGUCGUaGAGCaGGC-GGA----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 43369 0.66 0.758809
Target:  5'- cCGCuGCGGCGg--CaUCgGCCUCGCGg -3'
miRNA:   3'- -GCG-CGUCGUagaGcAGgCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 31987 0.66 0.758809
Target:  5'- cCGCGCAccGCGgugCcCGUgCCGCCgCGCGa -3'
miRNA:   3'- -GCGCGU--CGUa--GaGCA-GGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 133325 0.66 0.758809
Target:  5'- uCGCGCAGC-UCcUG-CCGgCaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuAGaGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124795 0.66 0.758809
Target:  5'- -cCGaCAGCcgCUCGUCgCGCUcuaggUGCGCg -3'
miRNA:   3'- gcGC-GUCGuaGAGCAG-GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 122664 0.66 0.758809
Target:  5'- gGCGCgaagAGCAUCaCGUUCGUCagcUGCGCc -3'
miRNA:   3'- gCGCG----UCGUAGaGCAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106834 0.66 0.758809
Target:  5'- gCGUGguGCGcgUCGUCCaGCC-CGcCGCc -3'
miRNA:   3'- -GCGCguCGUagAGCAGG-CGGaGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.