Results 101 - 120 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 5' | -59.5 | NC_005261.1 | + | 85541 | 0.66 | 0.74943 |
Target: 5'- gCGCGCgGGCggCUcCGUCUGCggCGcCGCg -3' miRNA: 3'- -GCGCG-UCGuaGA-GCAGGCGgaGC-GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 105909 | 0.66 | 0.74943 |
Target: 5'- gGCGCgGGCcgCUCGcgCgCGCCcacgcCGCGCc -3' miRNA: 3'- gCGCG-UCGuaGAGCa-G-GCGGa----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 67774 | 0.66 | 0.748486 |
Target: 5'- gGCGCcgcccccGGCcgccccCUCcUCCGCCUCgGCGCc -3' miRNA: 3'- gCGCG-------UCGua----GAGcAGGCGGAG-CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 97550 | 0.66 | 0.746596 |
Target: 5'- gGCGguGCcggCcCGUCCGCCcgggguuggcucggUgGCGCg -3' miRNA: 3'- gCGCguCGua-GaGCAGGCGG--------------AgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 94611 | 0.66 | 0.743754 |
Target: 5'- aGCGC-GCGccCUCGccgCCGCCggcgccgucgucggCGCGCg -3' miRNA: 3'- gCGCGuCGUa-GAGCa--GGCGGa-------------GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 115445 | 0.66 | 0.74943 |
Target: 5'- uCGCGCucGCGgccggaCUCcUCCGCCUCGgugucgguCGCg -3' miRNA: 3'- -GCGCGu-CGUa-----GAGcAGGCGGAGC--------GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 66627 | 0.66 | 0.753193 |
Target: 5'- uGCGCAuggccgacgagaccuGCGUCccgUCGgCCGCCUCcucCGCg -3' miRNA: 3'- gCGCGU---------------CGUAG---AGCaGGCGGAGc--GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 31987 | 0.66 | 0.758809 |
Target: 5'- cCGCGCAccGCGgugCcCGUgCCGCCgCGCGa -3' miRNA: 3'- -GCGCGU--CGUa--GaGCA-GGCGGaGCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 133325 | 0.66 | 0.758809 |
Target: 5'- uCGCGCAGC-UCcUG-CCGgCaCGCGCg -3' miRNA: 3'- -GCGCGUCGuAGaGCaGGCgGaGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 124795 | 0.66 | 0.758809 |
Target: 5'- -cCGaCAGCcgCUCGUCgCGCUcuaggUGCGCg -3' miRNA: 3'- gcGC-GUCGuaGAGCAG-GCGGa----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 122664 | 0.66 | 0.758809 |
Target: 5'- gGCGCgaagAGCAUCaCGUUCGUCagcUGCGCc -3' miRNA: 3'- gCGCG----UCGUAGaGCAGGCGGa--GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 106834 | 0.66 | 0.758809 |
Target: 5'- gCGUGguGCGcgUCGUCCaGCC-CGcCGCc -3' miRNA: 3'- -GCGCguCGUagAGCAGG-CGGaGC-GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 104123 | 0.66 | 0.758809 |
Target: 5'- cCGCGCGGUucgccgcgagCUCGgCCGCCaggucggccacCGCGCc -3' miRNA: 3'- -GCGCGUCGua--------GAGCaGGCGGa----------GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 95808 | 0.66 | 0.758809 |
Target: 5'- gGCGcCGGCGggggCUCG-CgGuCCUCGCGg -3' miRNA: 3'- gCGC-GUCGUa---GAGCaGgC-GGAGCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 54730 | 0.66 | 0.758809 |
Target: 5'- cCGCGCGGCcga--GUCCGaCgaaCGCGCg -3' miRNA: 3'- -GCGCGUCGuagagCAGGCgGa--GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 43270 | 0.66 | 0.758809 |
Target: 5'- uGCGUucggGGCGUCgCGgCCGCCUUucccgcgggggGCGCc -3' miRNA: 3'- gCGCG----UCGUAGaGCaGGCGGAG-----------CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 105831 | 0.66 | 0.758809 |
Target: 5'- aGaCGCAGCAgagcccgcugUCcgCGUCCGCCcggUCG-GCg -3' miRNA: 3'- gC-GCGUCGU----------AGa-GCAGGCGG---AGCgCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 94026 | 0.66 | 0.758809 |
Target: 5'- aGCGCAcCuUCUCGgCgGCCcggCGCGCc -3' miRNA: 3'- gCGCGUcGuAGAGCaGgCGGa--GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 93354 | 0.66 | 0.758809 |
Target: 5'- gCGCGCAGCGcgCgccaGUgCGCCg-GCGUg -3' miRNA: 3'- -GCGCGUCGUa-Gag--CAgGCGGagCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 15522 | 0.66 | 0.758809 |
Target: 5'- gCGUGCAgGCAggagCggaaggcgUCGUUCGCgaCGCGCg -3' miRNA: 3'- -GCGCGU-CGUa---G--------AGCAGGCGgaGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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