miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 120330 0.66 0.768081
Target:  5'- gCGCGCuGCGUCcccgagcgCGUCUcCCU-GCGCu -3'
miRNA:   3'- -GCGCGuCGUAGa-------GCAGGcGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 29826 0.66 0.768081
Target:  5'- cCGCGCcGCG-CUCG-CCGagCUgCGCGCc -3'
miRNA:   3'- -GCGCGuCGUaGAGCaGGCg-GA-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 100455 0.66 0.768081
Target:  5'- cCGC-CAGCuUgUCGcCCGCCgCGCGg -3'
miRNA:   3'- -GCGcGUCGuAgAGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 106341 0.66 0.768081
Target:  5'- cCGcCGCcGCGUC-CGcccCCGCCgcCGCGCu -3'
miRNA:   3'- -GC-GCGuCGUAGaGCa--GGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 29975 0.66 0.768081
Target:  5'- gGCGCGGUg---CG-CCGCCggCGCGUc -3'
miRNA:   3'- gCGCGUCGuagaGCaGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 84634 0.66 0.767159
Target:  5'- aGCGCcuccaccAGCGUgUUGUcccggcuggcgCCGCC-CGCGCc -3'
miRNA:   3'- gCGCG-------UCGUAgAGCA-----------GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 53769 0.66 0.767159
Target:  5'- cCGCGCGGCAaacgaccgggUCgucgccgucgccuUCGcccgCCGCCUCG-GCc -3'
miRNA:   3'- -GCGCGUCGU----------AG-------------AGCa---GGCGGAGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 51548 0.66 0.762531
Target:  5'- aGCGCAGacaGUCgcCGcaggcauaaccgucuUCUGCCUCGcCGCc -3'
miRNA:   3'- gCGCGUCg--UAGa-GC---------------AGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 78891 0.66 0.762531
Target:  5'- uCGCcaGCAGCGgcccgcccuuguugcUCUUcUUCGCCUUGUGCu -3'
miRNA:   3'- -GCG--CGUCGU---------------AGAGcAGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 132477 0.66 0.758809
Target:  5'- cCG-GCAGCGcCUCG-CCGuCCUgggaCGCGCc -3'
miRNA:   3'- -GCgCGUCGUaGAGCaGGC-GGA----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 43270 0.66 0.758809
Target:  5'- uGCGUucggGGCGUCgCGgCCGCCUUucccgcgggggGCGCc -3'
miRNA:   3'- gCGCG----UCGUAGaGCaGGCGGAG-----------CGCG- -5'
23616 5' -59.5 NC_005261.1 + 54730 0.66 0.758809
Target:  5'- cCGCGCGGCcga--GUCCGaCgaaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuagagCAGGCgGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 95808 0.66 0.758809
Target:  5'- gGCGcCGGCGggggCUCG-CgGuCCUCGCGg -3'
miRNA:   3'- gCGC-GUCGUa---GAGCaGgC-GGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 104123 0.66 0.758809
Target:  5'- cCGCGCGGUucgccgcgagCUCGgCCGCCaggucggccacCGCGCc -3'
miRNA:   3'- -GCGCGUCGua--------GAGCaGGCGGa----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 106834 0.66 0.758809
Target:  5'- gCGUGguGCGcgUCGUCCaGCC-CGcCGCc -3'
miRNA:   3'- -GCGCguCGUagAGCAGG-CGGaGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 122664 0.66 0.758809
Target:  5'- gGCGCgaagAGCAUCaCGUUCGUCagcUGCGCc -3'
miRNA:   3'- gCGCG----UCGUAGaGCAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124795 0.66 0.758809
Target:  5'- -cCGaCAGCcgCUCGUCgCGCUcuaggUGCGCg -3'
miRNA:   3'- gcGC-GUCGuaGAGCAG-GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133325 0.66 0.758809
Target:  5'- uCGCGCAGC-UCcUG-CCGgCaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuAGaGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 31987 0.66 0.758809
Target:  5'- cCGCGCAccGCGgugCcCGUgCCGCCgCGCGa -3'
miRNA:   3'- -GCGCGU--CGUa--GaGCA-GGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 43369 0.66 0.758809
Target:  5'- cCGCuGCGGCGg--CaUCgGCCUCGCGg -3'
miRNA:   3'- -GCG-CGUCGUagaGcAGgCGGAGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.