Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23617 | 3' | -59.8 | NC_005261.1 | + | 80267 | 1.08 | 0.001407 |
Target: 5'- cCAGGUACGUCUCCAGGCCGCCCGACAg -3' miRNA: 3'- -GUCCAUGCAGAGGUCCGGCGGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 101762 | 0.74 | 0.292681 |
Target: 5'- cCAGGUGCacgcccGcCUCCAGcgcgcguGCCGCCCGGCGg -3' miRNA: 3'- -GUCCAUG------CaGAGGUC-------CGGCGGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 60390 | 0.73 | 0.3584 |
Target: 5'- gAGGUGCGcCUCCauggcgccGGGCCGgCCCGGg- -3' miRNA: 3'- gUCCAUGCaGAGG--------UCCGGC-GGGCUgu -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 135428 | 0.72 | 0.407065 |
Target: 5'- gAGGUGCG-CUCgCAcGCCGCCCaGGCGg -3' miRNA: 3'- gUCCAUGCaGAG-GUcCGGCGGG-CUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 104543 | 0.71 | 0.441724 |
Target: 5'- cCAGGcgcagcuugGCGUCcgCCAGGUCGCCCaGCGc -3' miRNA: 3'- -GUCCa--------UGCAGa-GGUCCGGCGGGcUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 121804 | 0.71 | 0.450647 |
Target: 5'- gCAGGggGCGcguggcugggcUCUgCGGGCCGCCgCGGCGg -3' miRNA: 3'- -GUCCa-UGC-----------AGAgGUCCGGCGG-GCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 77368 | 0.71 | 0.459668 |
Target: 5'- cCAGGccagcGCGUCUCCGGcgcacccccuGCCGgCCGGCGa -3' miRNA: 3'- -GUCCa----UGCAGAGGUC----------CGGCgGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 108265 | 0.7 | 0.468784 |
Target: 5'- -cGGccaGCGUCUCCAcGGCCugGUCCGGCGu -3' miRNA: 3'- guCCa--UGCAGAGGU-CCGG--CGGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 6447 | 0.7 | 0.487288 |
Target: 5'- gGGGgcCGg--CCGGGCUGCCCGcACAc -3' miRNA: 3'- gUCCauGCagaGGUCCGGCGGGC-UGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 105385 | 0.7 | 0.496669 |
Target: 5'- gCGGGUGCGcgCUgaCCAcGcGCCGCUCGACGu -3' miRNA: 3'- -GUCCAUGCa-GA--GGU-C-CGGCGGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 1376 | 0.7 | 0.515668 |
Target: 5'- -uGGUccGCGUC-CCAGGCCacGCCgGGCGc -3' miRNA: 3'- guCCA--UGCAGaGGUCCGG--CGGgCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 49181 | 0.69 | 0.534953 |
Target: 5'- gGGGUGC-UCggCCAGGCCcucGgCCGACAg -3' miRNA: 3'- gUCCAUGcAGa-GGUCCGG---CgGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 63371 | 0.69 | 0.534953 |
Target: 5'- -cGGUGCGggugugCCGGGUCGCCCuGGCc -3' miRNA: 3'- guCCAUGCaga---GGUCCGGCGGG-CUGu -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 3640 | 0.69 | 0.544691 |
Target: 5'- cCGGGUgcgccgcuagcGCGUCUggagCgCAGGCCGCggCCGGCAg -3' miRNA: 3'- -GUCCA-----------UGCAGA----G-GUCCGGCG--GGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 12941 | 0.68 | 0.584156 |
Target: 5'- gUAGGUGCG-CUUCuGGCCcGCgCGGCGc -3' miRNA: 3'- -GUCCAUGCaGAGGuCCGG-CGgGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 87350 | 0.68 | 0.584156 |
Target: 5'- gCAGGgcCGUCUCgGGGCuagcgcccacCGCgCGGCAg -3' miRNA: 3'- -GUCCauGCAGAGgUCCG----------GCGgGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 81426 | 0.68 | 0.594121 |
Target: 5'- aCAGGcgGCGUCgUC-GGCCGCCCcGCGg -3' miRNA: 3'- -GUCCa-UGCAGaGGuCCGGCGGGcUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 30947 | 0.68 | 0.594121 |
Target: 5'- uCGGGgGCGggcCUCgAGGcCCGCCgCGACGg -3' miRNA: 3'- -GUCCaUGCa--GAGgUCC-GGCGG-GCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 122332 | 0.68 | 0.614123 |
Target: 5'- uCAGGUgGCG-CUCgCAGaGCuCGCCUGGCGg -3' miRNA: 3'- -GUCCA-UGCaGAG-GUC-CG-GCGGGCUGU- -5' |
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23617 | 3' | -59.8 | NC_005261.1 | + | 55840 | 0.68 | 0.614123 |
Target: 5'- cCGGGU-CGUC-CCGGuCCGCgCCGGCGc -3' miRNA: 3'- -GUCCAuGCAGaGGUCcGGCG-GGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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