miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 3' -59.8 NC_005261.1 + 122332 0.68 0.614123
Target:  5'- uCAGGUgGCG-CUCgCAGaGCuCGCCUGGCGg -3'
miRNA:   3'- -GUCCA-UGCaGAG-GUC-CG-GCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 81426 0.68 0.594121
Target:  5'- aCAGGcgGCGUCgUC-GGCCGCCCcGCGg -3'
miRNA:   3'- -GUCCa-UGCAGaGGuCCGGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 30947 0.68 0.594121
Target:  5'- uCGGGgGCGggcCUCgAGGcCCGCCgCGACGg -3'
miRNA:   3'- -GUCCaUGCa--GAGgUCC-GGCGG-GCUGU- -5'
23617 3' -59.8 NC_005261.1 + 87350 0.68 0.584156
Target:  5'- gCAGGgcCGUCUCgGGGCuagcgcccacCGCgCGGCAg -3'
miRNA:   3'- -GUCCauGCAGAGgUCCG----------GCGgGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 12941 0.68 0.584156
Target:  5'- gUAGGUGCG-CUUCuGGCCcGCgCGGCGc -3'
miRNA:   3'- -GUCCAUGCaGAGGuCCGG-CGgGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 3640 0.69 0.544691
Target:  5'- cCGGGUgcgccgcuagcGCGUCUggagCgCAGGCCGCggCCGGCAg -3'
miRNA:   3'- -GUCCA-----------UGCAGA----G-GUCCGGCG--GGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 63371 0.69 0.534953
Target:  5'- -cGGUGCGggugugCCGGGUCGCCCuGGCc -3'
miRNA:   3'- guCCAUGCaga---GGUCCGGCGGG-CUGu -5'
23617 3' -59.8 NC_005261.1 + 49181 0.69 0.534953
Target:  5'- gGGGUGC-UCggCCAGGCCcucGgCCGACAg -3'
miRNA:   3'- gUCCAUGcAGa-GGUCCGG---CgGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 1376 0.7 0.515668
Target:  5'- -uGGUccGCGUC-CCAGGCCacGCCgGGCGc -3'
miRNA:   3'- guCCA--UGCAGaGGUCCGG--CGGgCUGU- -5'
23617 3' -59.8 NC_005261.1 + 105385 0.7 0.496669
Target:  5'- gCGGGUGCGcgCUgaCCAcGcGCCGCUCGACGu -3'
miRNA:   3'- -GUCCAUGCa-GA--GGU-C-CGGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 6447 0.7 0.487288
Target:  5'- gGGGgcCGg--CCGGGCUGCCCGcACAc -3'
miRNA:   3'- gUCCauGCagaGGUCCGGCGGGC-UGU- -5'
23617 3' -59.8 NC_005261.1 + 108265 0.7 0.468784
Target:  5'- -cGGccaGCGUCUCCAcGGCCugGUCCGGCGu -3'
miRNA:   3'- guCCa--UGCAGAGGU-CCGG--CGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 77368 0.71 0.459668
Target:  5'- cCAGGccagcGCGUCUCCGGcgcacccccuGCCGgCCGGCGa -3'
miRNA:   3'- -GUCCa----UGCAGAGGUC----------CGGCgGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 121804 0.71 0.450647
Target:  5'- gCAGGggGCGcguggcugggcUCUgCGGGCCGCCgCGGCGg -3'
miRNA:   3'- -GUCCa-UGC-----------AGAgGUCCGGCGG-GCUGU- -5'
23617 3' -59.8 NC_005261.1 + 104543 0.71 0.441724
Target:  5'- cCAGGcgcagcuugGCGUCcgCCAGGUCGCCCaGCGc -3'
miRNA:   3'- -GUCCa--------UGCAGa-GGUCCGGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 135428 0.72 0.407065
Target:  5'- gAGGUGCG-CUCgCAcGCCGCCCaGGCGg -3'
miRNA:   3'- gUCCAUGCaGAG-GUcCGGCGGG-CUGU- -5'
23617 3' -59.8 NC_005261.1 + 60390 0.73 0.3584
Target:  5'- gAGGUGCGcCUCCauggcgccGGGCCGgCCCGGg- -3'
miRNA:   3'- gUCCAUGCaGAGG--------UCCGGC-GGGCUgu -5'
23617 3' -59.8 NC_005261.1 + 101762 0.74 0.292681
Target:  5'- cCAGGUGCacgcccGcCUCCAGcgcgcguGCCGCCCGGCGg -3'
miRNA:   3'- -GUCCAUG------CaGAGGUC-------CGGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 80267 1.08 0.001407
Target:  5'- cCAGGUACGUCUCCAGGCCGCCCGACAg -3'
miRNA:   3'- -GUCCAUGCAGAGGUCCGGCGGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.