miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 3' -59.8 NC_005261.1 + 1376 0.7 0.515668
Target:  5'- -uGGUccGCGUC-CCAGGCCacGCCgGGCGc -3'
miRNA:   3'- guCCA--UGCAGaGGUCCGG--CGGgCUGU- -5'
23617 3' -59.8 NC_005261.1 + 3640 0.69 0.544691
Target:  5'- cCGGGUgcgccgcuagcGCGUCUggagCgCAGGCCGCggCCGGCAg -3'
miRNA:   3'- -GUCCA-----------UGCAGA----G-GUCCGGCG--GGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 6233 0.66 0.75213
Target:  5'- cCAGGUGCG-C-CCGGGgagggccugcCCGCCCcGCGg -3'
miRNA:   3'- -GUCCAUGCaGaGGUCC----------GGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 6447 0.7 0.487288
Target:  5'- gGGGgcCGg--CCGGGCUGCCCGcACAc -3'
miRNA:   3'- gUCCauGCagaGGUCCGGCGGGC-UGU- -5'
23617 3' -59.8 NC_005261.1 + 12941 0.68 0.584156
Target:  5'- gUAGGUGCG-CUUCuGGCCcGCgCGGCGc -3'
miRNA:   3'- -GUCCAUGCaGAGGuCCGG-CGgGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 15352 0.66 0.703907
Target:  5'- cCAGGggaaagACGUC-CCGGcGgCGCUCGGCGc -3'
miRNA:   3'- -GUCCa-----UGCAGaGGUC-CgGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 19357 0.67 0.664228
Target:  5'- gGGGgaguuCGUCUCCAGGgUGCCagccaGGCc -3'
miRNA:   3'- gUCCau---GCAGAGGUCCgGCGGg----CUGu -5'
23617 3' -59.8 NC_005261.1 + 29979 0.66 0.703907
Target:  5'- -cGGUGCGcCgCC-GGCgCGUCCGGCAg -3'
miRNA:   3'- guCCAUGCaGaGGuCCG-GCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 30947 0.68 0.594121
Target:  5'- uCGGGgGCGggcCUCgAGGcCCGCCgCGACGg -3'
miRNA:   3'- -GUCCaUGCa--GAGgUCC-GGCGG-GCUGU- -5'
23617 3' -59.8 NC_005261.1 + 31428 0.67 0.644206
Target:  5'- cCGGGgagGCG-CUggCGGcGCCGCCCGGCGa -3'
miRNA:   3'- -GUCCa--UGCaGAg-GUC-CGGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 33917 0.67 0.674206
Target:  5'- gCGGGgccGCGUCUCUuGuGUCGCCCaGCAg -3'
miRNA:   3'- -GUCCa--UGCAGAGGuC-CGGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 35950 0.67 0.68415
Target:  5'- cCAGGccCGagcccggCCAGGCCGCUCGGCc -3'
miRNA:   3'- -GUCCauGCaga----GGUCCGGCGGGCUGu -5'
23617 3' -59.8 NC_005261.1 + 40856 0.66 0.75213
Target:  5'- aGGGcGCGUCcgCgaAGGCCGCCCcgaacaggguucGACAg -3'
miRNA:   3'- gUCCaUGCAGa-Gg-UCCGGCGGG------------CUGU- -5'
23617 3' -59.8 NC_005261.1 + 42900 0.67 0.68415
Target:  5'- -cGGcACGUgacccggcgCUCCgGGGCCGCCgGGCGa -3'
miRNA:   3'- guCCaUGCA---------GAGG-UCCGGCGGgCUGU- -5'
23617 3' -59.8 NC_005261.1 + 46677 0.67 0.674206
Target:  5'- -uGGccGCGcgCUCCAcggcGGCCGCCaCGGCAu -3'
miRNA:   3'- guCCa-UGCa-GAGGU----CCGGCGG-GCUGU- -5'
23617 3' -59.8 NC_005261.1 + 48743 0.67 0.68415
Target:  5'- gCAGGcacUGCGcguagUCgcgccccCCGGGCgGCCCGACGa -3'
miRNA:   3'- -GUCC---AUGC-----AGa------GGUCCGgCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 49181 0.69 0.534953
Target:  5'- gGGGUGC-UCggCCAGGCCcucGgCCGACAg -3'
miRNA:   3'- gUCCAUGcAGa-GGUCCGG---CgGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 55840 0.68 0.614123
Target:  5'- cCGGGU-CGUC-CCGGuCCGCgCCGGCGc -3'
miRNA:   3'- -GUCCAuGCAGaGGUCcGGCG-GGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 58366 0.67 0.654225
Target:  5'- cCAGGUgugcggcgACGUCggccUCCAGGgcgaacCCGCCCGGgAa -3'
miRNA:   3'- -GUCCA--------UGCAG----AGGUCC------GGCGGGCUgU- -5'
23617 3' -59.8 NC_005261.1 + 60390 0.73 0.3584
Target:  5'- gAGGUGCGcCUCCauggcgccGGGCCGgCCCGGg- -3'
miRNA:   3'- gUCCAUGCaGAGG--------UCCGGC-GGGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.