miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 3' -59.8 NC_005261.1 + 63371 0.69 0.534953
Target:  5'- -cGGUGCGggugugCCGGGUCGCCCuGGCc -3'
miRNA:   3'- guCCAUGCaga---GGUCCGGCGGG-CUGu -5'
23617 3' -59.8 NC_005261.1 + 64691 0.67 0.694054
Target:  5'- cCGGGcGCGUCcCgGGGCCGCCgCcGCGc -3'
miRNA:   3'- -GUCCaUGCAGaGgUCCGGCGG-GcUGU- -5'
23617 3' -59.8 NC_005261.1 + 77368 0.71 0.459668
Target:  5'- cCAGGccagcGCGUCUCCGGcgcacccccuGCCGgCCGGCGa -3'
miRNA:   3'- -GUCCa----UGCAGAGGUC----------CGGCgGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 80267 1.08 0.001407
Target:  5'- cCAGGUACGUCUCCAGGCCGCCCGACAg -3'
miRNA:   3'- -GUCCAUGCAGAGGUCCGGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 81426 0.68 0.594121
Target:  5'- aCAGGcgGCGUCgUC-GGCCGCCCcGCGg -3'
miRNA:   3'- -GUCCa-UGCAGaGGuCCGGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 87350 0.68 0.584156
Target:  5'- gCAGGgcCGUCUCgGGGCuagcgcccacCGCgCGGCAg -3'
miRNA:   3'- -GUCCauGCAGAGgUCCG----------GCGgGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 95369 0.67 0.644206
Target:  5'- gGGGUACuUCUCgC-GGCCcCCCGGCGc -3'
miRNA:   3'- gUCCAUGcAGAG-GuCCGGcGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 99831 0.66 0.703907
Target:  5'- cCGGGU-CGUCcgCCccGCCGCCCaGCGg -3'
miRNA:   3'- -GUCCAuGCAGa-GGucCGGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 101762 0.74 0.292681
Target:  5'- cCAGGUGCacgcccGcCUCCAGcgcgcguGCCGCCCGGCGg -3'
miRNA:   3'- -GUCCAUG------CaGAGGUC-------CGGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 101986 0.66 0.7244
Target:  5'- cCAGGUACGUCacggcgucguaguggCgCAGcucgccGCCGCCCGAg- -3'
miRNA:   3'- -GUCCAUGCAGa--------------G-GUC------CGGCGGGCUgu -5'
23617 3' -59.8 NC_005261.1 + 104543 0.71 0.441724
Target:  5'- cCAGGcgcagcuugGCGUCcgCCAGGUCGCCCaGCGc -3'
miRNA:   3'- -GUCCa--------UGCAGa-GGUCCGGCGGGcUGU- -5'
23617 3' -59.8 NC_005261.1 + 105385 0.7 0.496669
Target:  5'- gCGGGUGCGcgCUgaCCAcGcGCCGCUCGACGu -3'
miRNA:   3'- -GUCCAUGCa-GA--GGU-C-CGGCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 106837 0.67 0.664228
Target:  5'- -uGGUgcGCGUCgUCCAGcccGCCGCCUGGgGg -3'
miRNA:   3'- guCCA--UGCAG-AGGUC---CGGCGGGCUgU- -5'
23617 3' -59.8 NC_005261.1 + 108265 0.7 0.468784
Target:  5'- -cGGccaGCGUCUCCAcGGCCugGUCCGGCGu -3'
miRNA:   3'- guCCa--UGCAGAGGU-CCGG--CGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 115841 0.66 0.736923
Target:  5'- uGGGcGCGUUggcCCgcgcggcccccgccgAGGCgCGCCCGGCAa -3'
miRNA:   3'- gUCCaUGCAGa--GG---------------UCCG-GCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 121804 0.71 0.450647
Target:  5'- gCAGGggGCGcguggcugggcUCUgCGGGCCGCCgCGGCGg -3'
miRNA:   3'- -GUCCa-UGC-----------AGAgGUCCGGCGG-GCUGU- -5'
23617 3' -59.8 NC_005261.1 + 122332 0.68 0.614123
Target:  5'- uCAGGUgGCG-CUCgCAGaGCuCGCCUGGCGg -3'
miRNA:   3'- -GUCCA-UGCaGAG-GUC-CG-GCGGGCUGU- -5'
23617 3' -59.8 NC_005261.1 + 127583 0.68 0.634178
Target:  5'- cCAGGgcgcccuggGCGUCUUCgGGGCCGCgCUGAa- -3'
miRNA:   3'- -GUCCa--------UGCAGAGG-UCCGGCG-GGCUgu -5'
23617 3' -59.8 NC_005261.1 + 135428 0.72 0.407065
Target:  5'- gAGGUGCG-CUCgCAcGCCGCCCaGGCGg -3'
miRNA:   3'- gUCCAUGCaGAG-GUcCGGCGGG-CUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.