miRNA display CGI


Results 1 - 20 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 105667 0.66 0.977597
Target:  5'- cGGCGcgGAAGaCGCcCACGcccauGGCGCc -3'
miRNA:   3'- -CCGCaaCUUC-GCGaGUGCcau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 49261 0.66 0.977597
Target:  5'- cGGCGUcGgcGCGCacgucCGCGaGgaAGGCGCa -3'
miRNA:   3'- -CCGCAaCuuCGCGa----GUGC-Ca-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 118637 0.66 0.977597
Target:  5'- cGCGgc--GGCGCUCugGGccccgGGcCGCg -3'
miRNA:   3'- cCGCaacuUCGCGAGugCCa----UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 48034 0.66 0.977597
Target:  5'- gGGCGagGAGcacGCGCgCGCGGUcgGGGCccGCg -3'
miRNA:   3'- -CCGCaaCUU---CGCGaGUGCCA--UCUG--CG- -5'
23617 5' -52.9 NC_005261.1 + 59618 0.66 0.977355
Target:  5'- cGGCGgauGAGCGCcaggaccUCGCGGUcgcuguccucgAGGCGg -3'
miRNA:   3'- -CCGCaacUUCGCG-------AGUGCCA-----------UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 121673 0.66 0.976617
Target:  5'- cGGCGUaggUGuAGGCGCccuccagguugcgCAUGGaggcgUAGACGCc -3'
miRNA:   3'- -CCGCA---AC-UUCGCGa------------GUGCC-----AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 133591 0.66 0.976116
Target:  5'- cGCGcUGgcGCuGCUCACGGcccaccucgcgcuGGCGCu -3'
miRNA:   3'- cCGCaACuuCG-CGAGUGCCau-----------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 17197 0.66 0.97509
Target:  5'- cGGCGgcGAgcAGCGCgcccagCACGGacAGcaGCGCc -3'
miRNA:   3'- -CCGCaaCU--UCGCGa-----GUGCCa-UC--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 66690 0.66 0.97509
Target:  5'- cGGCGgcGAucgagaaggccGCGCUCAgcgagcgcCGGUuGAUGCg -3'
miRNA:   3'- -CCGCaaCUu----------CGCGAGU--------GCCAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 85941 0.66 0.97509
Target:  5'- uGGCGgccaGGGCGC-CGCGGaagcuGGCGUg -3'
miRNA:   3'- -CCGCaac-UUCGCGaGUGCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 34366 0.66 0.97509
Target:  5'- gGGCGccgcGcGGCGC-CGCGcGcAGACGCg -3'
miRNA:   3'- -CCGCaa--CuUCGCGaGUGC-CaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43830 0.66 0.97509
Target:  5'- cGUGgaGAAGCuGCUCGgcgaGGgcgaGGACGCg -3'
miRNA:   3'- cCGCaaCUUCG-CGAGUg---CCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 90397 0.66 0.97509
Target:  5'- cGGCGggGcuGGCGCccggCGCGGacuACGCg -3'
miRNA:   3'- -CCGCaaCu-UCGCGa---GUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 48985 0.66 0.972384
Target:  5'- aGGCGU---AGUGC---CGGUAGAUGCc -3'
miRNA:   3'- -CCGCAacuUCGCGaguGCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 3656 0.66 0.972384
Target:  5'- cGCGUcUGGAGCGCaggcCGCGGccggcAGGcCGCg -3'
miRNA:   3'- cCGCA-ACUUCGCGa---GUGCCa----UCU-GCG- -5'
23617 5' -52.9 NC_005261.1 + 28617 0.66 0.972384
Target:  5'- uGGCGgagcUGuGGCGC--AUGGUGGcCGCg -3'
miRNA:   3'- -CCGCa---ACuUCGCGagUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 46273 0.66 0.972384
Target:  5'- cGUGUccccGggGCGCUCuggcCGGgcaacGGCGCg -3'
miRNA:   3'- cCGCAa---CuuCGCGAGu---GCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 69232 0.66 0.972384
Target:  5'- cGCGcUGggGCgGUUCGCcg-AGGCGCu -3'
miRNA:   3'- cCGCaACuuCG-CGAGUGccaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 93494 0.66 0.972384
Target:  5'- cGCGgcGAAGCGCgcgaacCGCGGcgccguguUGGcCGCg -3'
miRNA:   3'- cCGCaaCUUCGCGa-----GUGCC--------AUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 3413 0.66 0.970662
Target:  5'- cGGCGggcUGAAGaGCgCGCGGgccagcguccaggcGGGCGCg -3'
miRNA:   3'- -CCGCa--ACUUCgCGaGUGCCa-------------UCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.