miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 66690 0.66 0.97509
Target:  5'- cGGCGgcGAucgagaaggccGCGCUCAgcgagcgcCGGUuGAUGCg -3'
miRNA:   3'- -CCGCaaCUu----------CGCGAGU--------GCCAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 33749 0.67 0.959068
Target:  5'- cGGCGccGggGCcgggcccGCUCGCGGggccCGCg -3'
miRNA:   3'- -CCGCaaCuuCG-------CGAGUGCCaucuGCG- -5'
23617 5' -52.9 NC_005261.1 + 34486 0.67 0.958323
Target:  5'- cGGCGggUGcuggagugggucgaGGGCGCUC-UGGUGGGCa- -3'
miRNA:   3'- -CCGCa-AC--------------UUCGCGAGuGCCAUCUGcg -5'
23617 5' -52.9 NC_005261.1 + 37989 0.67 0.95564
Target:  5'- cGCGUgGAcGCGCUaCGCGGcgcccgaGGACGUc -3'
miRNA:   3'- cCGCAaCUuCGCGA-GUGCCa------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 125400 0.67 0.95564
Target:  5'- cGGUacGUUccGGAGCGg-CGCGGgcGGCGCu -3'
miRNA:   3'- -CCG--CAA--CUUCGCgaGUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87489 0.67 0.95564
Target:  5'- cGGCGcgGccGUGCUgGCGcGcAGGCGCu -3'
miRNA:   3'- -CCGCaaCuuCGCGAgUGC-CaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 57766 0.67 0.95564
Target:  5'- cGGCGcgaucugGAAGCaguccgcgGCgucgCGCGGcGGGCGCg -3'
miRNA:   3'- -CCGCaa-----CUUCG--------CGa---GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75876 0.67 0.95564
Target:  5'- cGGCGccgUGGGcGCGCgcaGCGGc-GACGCc -3'
miRNA:   3'- -CCGCa--ACUU-CGCGag-UGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 74755 0.67 0.95564
Target:  5'- uGGCGcgGcAGCGCgccacaggCGCGGaggucGACGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGa-------GUGCCau---CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 9628 0.67 0.959438
Target:  5'- aGGCGggGguGgGggCugGGUGGGCGg -3'
miRNA:   3'- -CCGCaaCuuCgCgaGugCCAUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 24125 0.67 0.959438
Target:  5'- aGGCGggGguGgGggCugGGUGGGCGg -3'
miRNA:   3'- -CCGCaaCuuCgCgaGugCCAUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 79587 0.67 0.959438
Target:  5'- aGCGgaaguAGCGCUUGUGGUugaGGGCGCa -3'
miRNA:   3'- cCGCaacu-UCGCGAGUGCCA---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 14365 0.67 0.955247
Target:  5'- cGCGgccGggGCGg-CGCGGUggcccgcaucgccAGACGCu -3'
miRNA:   3'- cCGCaa-CuuCGCgaGUGCCA-------------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 98669 0.67 0.963005
Target:  5'- aGGCGagGgcGgGCUCcgcCGGggccggAGGCGCg -3'
miRNA:   3'- -CCGCaaCuuCgCGAGu--GCCa-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 52990 0.67 0.963005
Target:  5'- aGGCGggGGcGGCGCcCAgGcGUcGGCGCa -3'
miRNA:   3'- -CCGCaaCU-UCGCGaGUgC-CAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 27231 0.67 0.963005
Target:  5'- gGGUGaaggggGAGGCGC-CugGGgugGGGCGg -3'
miRNA:   3'- -CCGCaa----CUUCGCGaGugCCa--UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 22054 0.67 0.963005
Target:  5'- cGGCGggGuucAGGgGCUCcgGCGGggcucgaggGGGCGCc -3'
miRNA:   3'- -CCGCaaC---UUCgCGAG--UGCCa--------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 28240 0.67 0.961606
Target:  5'- cGGCGcgcgcgauagcgGggGCuGCUCGgGG-GGGCGCu -3'
miRNA:   3'- -CCGCaa----------CuuCG-CGAGUgCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 98514 0.67 0.959438
Target:  5'- cGGCGUacggGcAGGCGCgagauccggC-CGGUAGGCuGCg -3'
miRNA:   3'- -CCGCAa---C-UUCGCGa--------GuGCCAUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 92302 0.67 0.959438
Target:  5'- aGGCcagGAugAGCGCcgCGCGGUccGCGCg -3'
miRNA:   3'- -CCGcaaCU--UCGCGa-GUGCCAucUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.