miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 86374 0.68 0.922318
Target:  5'- cGCGUcGcAGCGCUC-CaGGUAGAagaGCa -3'
miRNA:   3'- cCGCAaCuUCGCGAGuG-CCAUCUg--CG- -5'
23617 5' -52.9 NC_005261.1 + 87879 0.68 0.922318
Target:  5'- uGGCGgagaGAGGCGCggagaggGCGGgccGGGCGUa -3'
miRNA:   3'- -CCGCaa--CUUCGCGag-----UGCCa--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 47753 0.68 0.922318
Target:  5'- uGGCGUcguccaccccGAGGCGCgUCuccCGGUAGAaGCg -3'
miRNA:   3'- -CCGCAa---------CUUCGCG-AGu--GCCAUCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 43637 0.68 0.922318
Target:  5'- gGGCGcccgUGuGGCGCg-GCGGU-GACGUg -3'
miRNA:   3'- -CCGCa---ACuUCGCGagUGCCAuCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 23420 0.68 0.922318
Target:  5'- -aCGgcGAGGCGCUgCGCGucgGGGCGCc -3'
miRNA:   3'- ccGCaaCUUCGCGA-GUGCca-UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 83751 0.68 0.922318
Target:  5'- aGGUGgcGgcGCGC-CACGGccgGGuCGCa -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUGCCa--UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 12015 0.68 0.922318
Target:  5'- -cCG-UGAAGCGCUCGCccgcGACGCg -3'
miRNA:   3'- ccGCaACUUCGCGAGUGccauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 90172 0.68 0.916573
Target:  5'- aGGCGgagGggGgGgaCGgGGaGGACGCa -3'
miRNA:   3'- -CCGCaa-CuuCgCgaGUgCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 121124 0.68 0.927816
Target:  5'- gGGCGcgGAGGCGCgggCGCGa---GCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGa--GUGCcaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 4825 0.68 0.927816
Target:  5'- cGCGUUG-GGCGCagGCGGc-GGCGUc -3'
miRNA:   3'- cCGCAACuUCGCGagUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 32337 0.68 0.930996
Target:  5'- cGGCGUggccugggacgcgGAccAGgGCcCGCGGgAGACGCu -3'
miRNA:   3'- -CCGCAa------------CU--UCgCGaGUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 20288 0.68 0.942825
Target:  5'- cGCGggGgcGCGCUUGCGGcAGAaaaacgGCg -3'
miRNA:   3'- cCGCaaCuuCGCGAGUGCCaUCUg-----CG- -5'
23617 5' -52.9 NC_005261.1 + 135099 0.68 0.942825
Target:  5'- cGGCGgcGGAGCGCgagGCGGacccCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGag-UGCCaucuGCG- -5'
23617 5' -52.9 NC_005261.1 + 127648 0.68 0.942825
Target:  5'- cGGCGccGggGgGCgCGCGGguucgGGGCGg -3'
miRNA:   3'- -CCGCaaCuuCgCGaGUGCCa----UCUGCg -5'
23617 5' -52.9 NC_005261.1 + 98357 0.68 0.942825
Target:  5'- gGGCGggGGugGGCGCgggCucUGGcGGGCGCa -3'
miRNA:   3'- -CCGCaaCU--UCGCGa--Gu-GCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 2530 0.68 0.942825
Target:  5'- gGGCGgcaguaGGccgccAGCGC-CGCGGcgcUGGGCGCg -3'
miRNA:   3'- -CCGCaa----CU-----UCGCGaGUGCC---AUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 1312 0.68 0.942825
Target:  5'- cGGCGgcGGcacGCGCUC-CGG--GACGCc -3'
miRNA:   3'- -CCGCaaCUu--CGCGAGuGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 5734 0.68 0.938069
Target:  5'- cGGCGggaGAAGCGCgCGCGGaAGGUGa -3'
miRNA:   3'- -CCGCaa-CUUCGCGaGUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 75987 0.68 0.933066
Target:  5'- gGGCGcgGccGCcCUCGCGcUGGACGCc -3'
miRNA:   3'- -CCGCaaCuuCGcGAGUGCcAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 24022 0.68 0.933066
Target:  5'- aGGgGgcGGAGCGCgggguUCG-GGUGGGCGUc -3'
miRNA:   3'- -CCgCaaCUUCGCG-----AGUgCCAUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.