miRNA display CGI


Results 21 - 40 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 109201 0.73 0.736051
Target:  5'- gGGCGUgcgcAGGCGCUC---GUAGGCGCg -3'
miRNA:   3'- -CCGCAac--UUCGCGAGugcCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 97079 0.73 0.715961
Target:  5'- cGCGUcgGAGGCGCcggCugGGccggGGGCGCc -3'
miRNA:   3'- cCGCAa-CUUCGCGa--GugCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 133818 0.73 0.726048
Target:  5'- cGGCGacGAGGCGCUgCGCGGccgcguGCGCg -3'
miRNA:   3'- -CCGCaaCUUCGCGA-GUGCCauc---UGCG- -5'
23617 5' -52.9 NC_005261.1 + 31947 0.73 0.715961
Target:  5'- cGGCGccaacguGCGCUaCACGGUGGccACGCg -3'
miRNA:   3'- -CCGCaacuu--CGCGA-GUGCCAUC--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 91734 0.73 0.736051
Target:  5'- cGGCGggcuucgcGGCGCUCACGccGgcGGCGCa -3'
miRNA:   3'- -CCGCaacu----UCGCGAGUGC--CauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 137036 0.73 0.709873
Target:  5'- cGGCGUcggUGGAGgGCggaccgucggcaggCGCGG-AGGCGCg -3'
miRNA:   3'- -CCGCA---ACUUCgCGa-------------GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 132103 0.73 0.726048
Target:  5'- gGGCGgccgcGAcGCGCUCGUGGagcgGGACGCg -3'
miRNA:   3'- -CCGCaa---CUuCGCGAGUGCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 97120 0.72 0.793762
Target:  5'- cGCGgccgGAGGCGC-CGCGGccacgcucggAGGCGCu -3'
miRNA:   3'- cCGCaa--CUUCGCGaGUGCCa---------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 58269 0.72 0.755766
Target:  5'- cGCGcucGccGCGCUCACGGggccGGCGCg -3'
miRNA:   3'- cCGCaa-CuuCGCGAGUGCCau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 63338 0.72 0.755766
Target:  5'- uGGCGcugcGAGGCccacggGUUCACGGUGG-CGCg -3'
miRNA:   3'- -CCGCaa--CUUCG------CGAGUGCCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 28785 0.72 0.793762
Target:  5'- cGGCGc--GGGCGCUCGCGGccgcggcGGAgGCa -3'
miRNA:   3'- -CCGCaacUUCGCGAGUGCCa------UCUgCG- -5'
23617 5' -52.9 NC_005261.1 + 97198 0.72 0.765459
Target:  5'- cGCGgccgGAAGCGC-CGCGGccacgcucggAGGCGCu -3'
miRNA:   3'- cCGCaa--CUUCGCGaGUGCCa---------UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 56116 0.72 0.784466
Target:  5'- aGCGgcgGGAGCGCgccgCAgGGcgggGGGCGCg -3'
miRNA:   3'- cCGCaa-CUUCGCGa---GUgCCa---UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 95807 0.71 0.829344
Target:  5'- cGGCGccGGcgGGgGCUCGCGGUccucgcGGCGCu -3'
miRNA:   3'- -CCGCaaCU--UCgCGAGUGCCAu-----CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 12427 0.71 0.820706
Target:  5'- gGGCGgcGGAGgGCUUGCGGcgucGGcCGCg -3'
miRNA:   3'- -CCGCaaCUUCgCGAGUGCCa---UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 46672 0.71 0.829344
Target:  5'- cGCGUUGGccgcGCGCUcCACGGcGGcCGCc -3'
miRNA:   3'- cCGCAACUu---CGCGA-GUGCCaUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 86114 0.71 0.811891
Target:  5'- gGGCGUcGGAGCGC--GCuGUAcGACGCg -3'
miRNA:   3'- -CCGCAaCUUCGCGagUGcCAU-CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 14130 0.71 0.811891
Target:  5'- gGGCGgUGGgcAGuCGCUCGCGa-GGACGCu -3'
miRNA:   3'- -CCGCaACU--UC-GCGAGUGCcaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43783 0.71 0.802907
Target:  5'- cGGCGcgcgGAgGGCGC-CGCGGgugaggGGGCGCc -3'
miRNA:   3'- -CCGCaa--CU-UCGCGaGUGCCa-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 89561 0.71 0.811891
Target:  5'- gGGCGUaccucuUGGAGaaGCUCACGGccgucuacGACGCg -3'
miRNA:   3'- -CCGCA------ACUUCg-CGAGUGCCau------CUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.