miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 102742 0.71 0.837796
Target:  5'- gGGCGUUcuucaGGGCGCUUGCcGcGGACGCg -3'
miRNA:   3'- -CCGCAAc----UUCGCGAGUGcCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 89561 0.71 0.811891
Target:  5'- gGGCGUaccucuUGGAGaaGCUCACGGccgucuacGACGCg -3'
miRNA:   3'- -CCGCA------ACUUCg-CGAGUGCCau------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 43783 0.71 0.802907
Target:  5'- cGGCGcgcgGAgGGCGC-CGCGGgugaggGGGCGCc -3'
miRNA:   3'- -CCGCaa--CU-UCGCGaGUGCCa-----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 86114 0.71 0.811891
Target:  5'- gGGCGUcGGAGCGC--GCuGUAcGACGCg -3'
miRNA:   3'- -CCGCAaCUUCGCGagUGcCAU-CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 132610 0.71 0.820706
Target:  5'- cGGCGagccgccagGggGCGCUgGCGccgaGGACGCg -3'
miRNA:   3'- -CCGCaa-------CuuCGCGAgUGCca--UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 14130 0.71 0.811891
Target:  5'- gGGCGgUGGgcAGuCGCUCGCGa-GGACGCu -3'
miRNA:   3'- -CCGCaACU--UC-GCGAGUGCcaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 56017 0.71 0.837796
Target:  5'- gGGCGggGAAGaCGCaaUCGCGcccguGACGCg -3'
miRNA:   3'- -CCGCaaCUUC-GCG--AGUGCcau--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 87116 0.7 0.861959
Target:  5'- cGGCGUUguaGAAGgGC-CGCGGgu-ACGCg -3'
miRNA:   3'- -CCGCAA---CUUCgCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 72446 0.7 0.861959
Target:  5'- cGGCG--GggGCGCcCGCGGcgAG-CGCg -3'
miRNA:   3'- -CCGCaaCuuCGCGaGUGCCa-UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 19254 0.7 0.861959
Target:  5'- gGGCGcUGAacAGCGCgCGCGGgu-ACGCc -3'
miRNA:   3'- -CCGCaACU--UCGCGaGUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 17738 0.7 0.85411
Target:  5'- cGGCGcucGGAGCGggCggacuucugggGCGGUGGugGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaG-----------UGCCAUCugCG- -5'
23617 5' -52.9 NC_005261.1 + 70507 0.7 0.85411
Target:  5'- uGGCGUUc-GGCGC-CACGG-GGACGa -3'
miRNA:   3'- -CCGCAAcuUCGCGaGUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 88601 0.7 0.861959
Target:  5'- cGGCccgGcGGCGC-CACGGUcguGACGCu -3'
miRNA:   3'- -CCGcaaCuUCGCGaGUGCCAu--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 82161 0.7 0.861959
Target:  5'- cGCGccaGcAAGCGCggCGCGGaAGGCGCg -3'
miRNA:   3'- cCGCaa-C-UUCGCGa-GUGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 2127 0.7 0.869592
Target:  5'- cGCGccGAGcGCGCUCACGuccGGCGCg -3'
miRNA:   3'- cCGCaaCUU-CGCGAGUGCcauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 48430 0.7 0.869592
Target:  5'- aGGCGguaca--GCUCGCGGUGcGugGCg -3'
miRNA:   3'- -CCGCaacuucgCGAGUGCCAU-CugCG- -5'
23617 5' -52.9 NC_005261.1 + 98394 0.7 0.869592
Target:  5'- cGGCGUgGggGCGggCGCGGacucUGGugGg -3'
miRNA:   3'- -CCGCAaCuuCGCgaGUGCC----AUCugCg -5'
23617 5' -52.9 NC_005261.1 + 2396 0.7 0.877005
Target:  5'- uGGCGgcGAGcGCGCcCGCGGgccccGCGCg -3'
miRNA:   3'- -CCGCaaCUU-CGCGaGUGCCauc--UGCG- -5'
23617 5' -52.9 NC_005261.1 + 74865 0.7 0.877005
Target:  5'- gGGCGgagGAGGCGgaCGCGGc-GGCGg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaGUGCCauCUGCg -5'
23617 5' -52.9 NC_005261.1 + 13670 0.7 0.877005
Target:  5'- cGCGgggGggGCGCggggcgCGCGGgcgugGGGCGg -3'
miRNA:   3'- cCGCaa-CuuCGCGa-----GUGCCa----UCUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.