miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23617 5' -52.9 NC_005261.1 + 17738 0.7 0.85411
Target:  5'- cGGCGcucGGAGCGggCggacuucugggGCGGUGGugGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaG-----------UGCCAUCugCG- -5'
23617 5' -52.9 NC_005261.1 + 74284 0.7 0.877005
Target:  5'- cGGCGggcGggGCGgUCGCcgccGGgcagcAGACGCg -3'
miRNA:   3'- -CCGCaa-CuuCGCgAGUG----CCa----UCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 48430 0.7 0.869592
Target:  5'- aGGCGguaca--GCUCGCGGUGcGugGCg -3'
miRNA:   3'- -CCGCaacuucgCGAGUGCCAU-CugCG- -5'
23617 5' -52.9 NC_005261.1 + 89178 0.7 0.852515
Target:  5'- cGCGgacaaccUGGAGcCGCUCGCGGgcgccgaggccGACGCg -3'
miRNA:   3'- cCGCa------ACUUC-GCGAGUGCCau---------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 21702 0.7 0.85411
Target:  5'- cGCGggcGAGCGCuUCACGGaGGACuGCu -3'
miRNA:   3'- cCGCaacUUCGCG-AGUGCCaUCUG-CG- -5'
23617 5' -52.9 NC_005261.1 + 70507 0.7 0.85411
Target:  5'- uGGCGUUc-GGCGC-CACGG-GGACGa -3'
miRNA:   3'- -CCGCAAcuUCGCGaGUGCCaUCUGCg -5'
23617 5' -52.9 NC_005261.1 + 23477 0.7 0.846054
Target:  5'- cGGCGgcGAGuGCGCgggcccgcCugGGcAGGCGCg -3'
miRNA:   3'- -CCGCaaCUU-CGCGa-------GugCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 59421 0.69 0.897864
Target:  5'- cGGCGcUGucGCGCggCcCGGcAGGCGCc -3'
miRNA:   3'- -CCGCaACuuCGCGa-GuGCCaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 75507 0.69 0.891146
Target:  5'- gGGCGcugGAGGCGCaCGCcGUGGuCGCc -3'
miRNA:   3'- -CCGCaa-CUUCGCGaGUGcCAUCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 14964 0.69 0.904344
Target:  5'- gGGCGUgccUGggGCGaCUgCGCGGcc-GCGCc -3'
miRNA:   3'- -CCGCA---ACuuCGC-GA-GUGCCaucUGCG- -5'
23617 5' -52.9 NC_005261.1 + 29962 0.69 0.883483
Target:  5'- aGGCGcuaGAGGCGg-CGCGGUGcgccgccGGCGCg -3'
miRNA:   3'- -CCGCaa-CUUCGCgaGUGCCAU-------CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 74480 0.69 0.884191
Target:  5'- cGGCGUgccUGGgcgggaucucGGCGCUCuuCGGggcGGCGCc -3'
miRNA:   3'- -CCGCA---ACU----------UCGCGAGu-GCCau-CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 135374 0.69 0.884191
Target:  5'- cGCGUcaccugGGAGaCGCUCAUGGUccacGGcCGCg -3'
miRNA:   3'- cCGCAa-----CUUC-GCGAGUGCCA----UCuGCG- -5'
23617 5' -52.9 NC_005261.1 + 77079 0.69 0.884191
Target:  5'- cGCGc-GAGGCGCUgGCGc-GGACGCu -3'
miRNA:   3'- cCGCaaCUUCGCGAgUGCcaUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 94308 0.69 0.889084
Target:  5'- cGGCGacccaggGggGCGC-CAgcccgaacucgcgcCGGUAGGCGUc -3'
miRNA:   3'- -CCGCaa-----CuuCGCGaGU--------------GCCAUCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 45617 0.69 0.891146
Target:  5'- cGGCGgcGcGGCGCggCGCGGcGGGCccGCg -3'
miRNA:   3'- -CCGCaaCuUCGCGa-GUGCCaUCUG--CG- -5'
23617 5' -52.9 NC_005261.1 + 71179 0.69 0.891146
Target:  5'- cGCGUccgGgcGCaGCUCGCGG--GGCGCg -3'
miRNA:   3'- cCGCAa--CuuCG-CGAGUGCCauCUGCG- -5'
23617 5' -52.9 NC_005261.1 + 13122 0.69 0.897864
Target:  5'- cGGCGgccgcGggGCGCgugugguCGGUGacGGCGCg -3'
miRNA:   3'- -CCGCaa---CuuCGCGagu----GCCAU--CUGCG- -5'
23617 5' -52.9 NC_005261.1 + 123163 0.69 0.897864
Target:  5'- gGGCGggGcGGGCGCgCGgGcGUGGugGCu -3'
miRNA:   3'- -CCGCaaC-UUCGCGaGUgC-CAUCugCG- -5'
23617 5' -52.9 NC_005261.1 + 68741 0.69 0.884191
Target:  5'- cGGCGggaaGAAGCGCcCGCcg-GGGCGCc -3'
miRNA:   3'- -CCGCaa--CUUCGCGaGUGccaUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.